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晶体中的催化作用:糖原磷酸化酶b的同步辐射研究

Catalysis in the crystal: synchrotron radiation studies with glycogen phosphorylase b.

作者信息

Hajdu J, Acharya K R, Stuart D I, McLaughlin P J, Barford D, Oikonomakos N G, Klein H, Johnson L N

出版信息

EMBO J. 1987 Feb;6(2):539-46. doi: 10.1002/j.1460-2075.1987.tb04786.x.

DOI:10.1002/j.1460-2075.1987.tb04786.x
PMID:3107984
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC553427/
Abstract

Direct observation of the progress of a catalysed reaction in crystals of glycogen phosphorylase b has been made possible through fast crystallographic data collection achieved at the Synchrotron Radiation source at Daresbury, UK. In the best experiments, data to 2.7 A resolution (some 108,300 measurements; 21,200 unique reflections) were measured in 25 min. In a series of time-resolved studies in which the control properties of the enzyme were exploited in order to slow down the reaction, the conversion of heptenitol to heptulose-2-phosphate, the phosphorylysis of maltoheptaose to yield glucose-1-phosphate and the oligosaccharide synthesis reaction involving maltotriose and glucose-1-phosphate have been monitored in the crystal. Changes in electron density in the difference Fourier maps are observed as the reaction proceeds not only at the catalytic site but also the allosteric and glycogen storage sites. Phosphorylase b is present in the crystals in the T state and under these conditions exhibits low affinity for both phosphate and oligosaccharide substrates. There are pronounced conformational changes associated with the formation and binding of the high-affinity dead-end product, heptulose-2-phosphate, which show that movement of an arginine residue, Arg 569, is critical for formation of the substrate-phosphate recognition site. The results are discussed with reference to proposals for the enzymic mechanism of phosphorylase. The feasibility for time-resolved studies on other systems and recent advances in this area utilizing Laue diffraction are also discussed.

摘要

通过在英国达累斯伯里的同步辐射源上实现的快速晶体学数据收集,得以直接观察糖原磷酸化酶b晶体中催化反应的进程。在最佳实验中,25分钟内测量到了分辨率为2.7埃的数据(约108,300次测量;21,200个独立反射)。在一系列时间分辨研究中,利用该酶的控制特性来减缓反应,监测了晶体中庚烯醇向庚酮糖-2-磷酸的转化、麦芽庚糖磷酸解生成葡萄糖-1-磷酸以及涉及麦芽三糖和葡萄糖-1-磷酸的寡糖合成反应。随着反应进行,不仅在催化位点,而且在变构位点和糖原储存位点,差分傅里叶图中的电子密度都发生了变化。磷酸化酶b在晶体中以T态存在,在这些条件下对磷酸盐和寡糖底物均表现出低亲和力。与高亲和力终产物庚酮糖-2-磷酸的形成和结合相关的构象变化十分显著,这表明精氨酸残基Arg 569的移动对于底物-磷酸盐识别位点的形成至关重要。结合磷酸化酶的酶促机制的相关提议对结果进行了讨论。还讨论了对其他系统进行时间分辨研究的可行性以及利用劳厄衍射在该领域的最新进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a643/553427/7967cd0945fa/emboj00242-0243-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a643/553427/7967cd0945fa/emboj00242-0243-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a643/553427/7967cd0945fa/emboj00242-0243-a.jpg

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