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细胞代谢的演化与具有全球生产力的生物圈的兴起。

Evolution of cellular metabolism and the rise of a globally productive biosphere.

机构信息

Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, USA; Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, USA.

出版信息

Free Radic Biol Med. 2019 Aug 20;140:172-187. doi: 10.1016/j.freeradbiomed.2019.05.004. Epub 2019 May 11.

Abstract

Metabolic processes in cells and chemical processes in the environment are fundamentally intertwined and have evolved in concert for most of Earth's existence. Here I argue that intrinsic properties of cellular metabolism imposed central constraints on the historical trajectories of biopsheric productivity and atmospheric oxygenation. Photosynthesis depends on iron, but iron is highly insoluble under the aerobic conditions produced by oxygenic photosynthesis. These counteracting constraints led to two major stages of Earth oxygenation. After a cyanobacteria-driven biospheric expansion near the Archean-Proterozoic boundary, productivity remained largely restricted to continental boundaries and shallow aquatic environments where weathering inputs made iron more accessible. The anoxic deep open ocean was rich in free iron during the Proterozoic, but this iron was largely inaccessible, partly because an otherwise nutrient-poor ocean was limiting to photosynthesis, but also because a photosynthetic expansion would have quenched its own iron supply. Near the Proterozoic-Phanerozoic boundary, bioenergetics innovations allowed eukaryotic photosynthesis to overcome these interconnected negative feedbacks and begin expanding into the deep open oceans and onto the continents, where nutrients are inherently harder to come by. Key insights into what drove the ecological rise of eukaryotic photosynthesis emerge from analyses of marine Synechococcus and Prochlorococcus, abundant marine picocyanobacteria whose ancestors colonized the oceans in the Neoproterozoic. The reconstructed evolution of this group reveals a sequence of innovations that ultimately produced a form of photosynthesis in Prochlorococcus that is more like that of green plant cells than other cyanobacteria. Innovations increased the energy flux of cells, thereby enhancing their ability to acquire sparse nutrients, and as by-product also increased the production of organic carbon waste. Some of these organic waste products had the ability to chelate iron and make it bioavailable, thereby indirectly pushing the oceans through a transition from an anoxic state rich in free iron to an oxygenated state with organic carbon-bound iron. Resulting conditions (and parallel processes on the continents) in turn led to a series of positive feedbacks that increased the availability of other nutrients, thereby promoting the rise of a globally productive biosphere. In addition to the occurrence of major biospheric expansions, the several hundred million-year periods around the Archean-Proterozoic and Proterozoic-Phanerozoic boundaries share a number of other parallels. Both epochs have also been linked to major carbon cycle perturbations and global glaciations, as well as changes in the nature of plate tectonics and increases in continental exposure and weathering. This suggests the dynamics of life and Earth are intimately intertwined across many levels and that general principles governed transitions in these coupled dynamics at both times in Earth history.

摘要

细胞内的代谢过程和环境中的化学过程从根本上是相互交织的,并随着地球的存在而协同进化。在这里,我认为细胞代谢的内在特性对生物界生产力和大气氧合的历史轨迹施加了核心限制。光合作用依赖于铁,但在产氧光合作用产生的有氧条件下,铁的溶解度非常低。这些相互矛盾的限制导致了地球氧合的两个主要阶段。在太古宙-元古宙边界附近蓝藻驱动的生物界扩张之后,生产力仍然主要局限于大陆边界和浅水生境,在这些地方风化输入使铁更容易获得。缺氧的深海富含游离铁,但这些铁大部分无法获得,部分原因是贫营养的海洋限制了光合作用,但也因为光合作用的扩张会耗尽自身的铁供应。在元古宙-显生宙边界附近,生物能量学的创新使真核光合作用能够克服这些相互关联的负反馈,并开始扩展到深海和大陆,而在这些地方,营养物质本来就很难获得。对真核光合作用生态崛起驱动因素的关键见解来自对海洋聚球藻和原绿球藻的分析,这是两种丰富的海洋蓝细菌,它们的祖先在新元古代就已经殖民海洋。该组的重建进化揭示了一系列创新,最终使原绿球藻产生了一种更类似于绿色植物细胞的光合作用形式,而不是其他蓝细菌。创新提高了细胞的能量通量,从而增强了它们获取稀疏营养物质的能力,同时也作为副产品增加了有机碳废物的产生。这些有机废物的一些产物具有螯合铁并使其具有生物利用性的能力,从而间接地推动海洋从富含游离铁的缺氧状态过渡到富含有机碳结合铁的氧化状态。由此产生的条件(以及大陆上的平行过程)反过来又引发了一系列正反馈,增加了其他营养物质的可用性,从而促进了具有全球生产力的生物界的兴起。除了主要生物界扩张的发生外,太古宙-元古宙和元古宙-显生宙边界周围的数亿年时期还有许多其他共同点。这两个时期也与主要的碳循环扰动和全球冰川作用以及板块构造性质的变化和大陆暴露及风化的增加有关。这表明生命和地球的动态在多个层面上是紧密交织的,一般原则在地球历史上的这两个时期都控制着这些耦合动态的转变。

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