Barone Vincenzo, Cacelli Ivo, Ferretti Alessandro, Prampolini Giacomo
Scuola Normale Superiore di Pisa, Piazza dei Cavalieri, I-56126 Pisa, Italy.
Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy.
Biomimetics (Basel). 2017 Sep 13;2(3):18. doi: 10.3390/biomimetics2030018.
Noncovalent interactions play a significant role in a wide variety of biological processes and bio-inspired species. It is, therefore, important to have at hand suitable computational methods for their investigation. In this paper, we report on the contribution of dispersion and hydrogen bonds in both stacked and T-shaped catechol dimers, with the aim of delineating the respective role of these classes of interactions in determining the most stable structure. By using second-order Møller⁻Plesset (MP2) calculations with a small basis set, specifically optimized for these species, we have explored a number of significant sections of the interaction potential energy surface and found the most stable structures for the dimer, in good agreement with the highly accurate, but computationally more expensive coupled cluster single and double excitation and the perturbative triples (CCSD(T))/CBS) method.
非共价相互作用在各种各样的生物过程和受生物启发的物种中发挥着重要作用。因此,拥有合适的计算方法来研究它们很重要。在本文中,我们报告了色散和氢键在堆叠和T形儿茶酚二聚体中的作用,目的是描绘这些相互作用类别在确定最稳定结构中的各自作用。通过使用二阶Møller-Plesset(MP2)计算,并采用专门针对这些物种优化的小基组,我们探索了相互作用势能面的许多重要部分,并找到了二聚体的最稳定结构,这与高精度但计算成本更高的耦合簇单双激发和微扰三重态(CCSD(T)/CBS)方法高度一致。