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细菌竞争模型中的通道形成和临界粗化。

Lane formation and critical coarsening in a model of bacterial competition.

机构信息

Department of Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan and Department of Physics, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, 152-8551, Japan.

出版信息

Phys Rev E. 2019 Apr;99(4-1):042403. doi: 10.1103/PhysRevE.99.042403.

Abstract

We study competition of two nonmotile bacterial strains in a three-dimensional channel numerically and analyze how their configuration evolves in space and time. We construct a lattice model that takes into account self-replication, mutation, and killing of bacteria. When mutation is not significant, the two strains segregate and form stripe patterns along the channel. The formed lanes are gradually rearranged, with increasing length scales in the two-dimensional cross-sectional plane. We characterize it in terms of coarsening and phase ordering in statistical physics. In particular, for the simple model without mutation and killing, we find logarithmically slow coarsening, which is characteristic of the two-dimensional voter model. With mutation and killing, we find a phase transition from a monopolistic phase, in which lanes are formed and coarsened until the system is eventually dominated by one of the two strains, to an equally mixed and disordered phase without lane structure. Critical behavior at the transition point is also studied and compared with the generalized voter class and the Ising class. These results are accounted for by continuum equations, obtained by applying a mean-field approximation along the channel axis. Our findings indicate relevance of critical coarsening of two-dimensional systems in the problem of bacterial competition within anisotropic three-dimensional geometry.

摘要

我们通过数值方法研究了三维通道中两种非运动细菌菌株的竞争,并分析了它们在空间和时间上的配置如何演变。我们构建了一个晶格模型,该模型考虑了细菌的自我复制、突变和杀伤。当突变不显著时,两种菌株会沿着通道分离并形成条纹图案。形成的车道会逐渐重新排列,二维横截面平面的长度尺度会增加。我们用统计物理学中的粗化和相序来描述它。特别是,对于没有突变和杀伤的简单模型,我们发现对数缓慢的粗化,这是二维投票者模型的特征。有了突变和杀伤,我们发现了一个从垄断相到均匀混合和无序相的相变,在垄断相中,车道形成并粗化,直到系统最终被两种菌株中的一种主导,而没有车道结构。还研究了相变点处的临界行为,并将其与广义投票者类和伊辛类进行了比较。这些结果由沿通道轴应用平均场近似得到的连续方程来解释。我们的发现表明,二维系统的临界粗化在各向异性三维几何中细菌竞争问题中具有相关性。

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