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p63 蛋白家族成员对 p53 依赖性转录和增强子活性的调控。

Control of p53-dependent transcription and enhancer activity by the p53 family member p63.

机构信息

From the Department of Biological Sciences, State University of New York at Albany, Albany, New York 12222.

From the Department of Biological Sciences, State University of New York at Albany, Albany, New York 12222

出版信息

J Biol Chem. 2019 Jul 5;294(27):10720-10736. doi: 10.1074/jbc.RA119.007965. Epub 2019 May 21.

Abstract

Transcriptional activation by p53 provides powerful, organism-wide tumor suppression. We hypothesized that the local chromatin environment, including differential enhancer activities, contributes to various p53-dependent transcriptional activities in different cell types during stress-induced signaling. In this work, using ChIP-sequencing, immunoblotting, quantitative PCR, and computational analyses across various mammalian cell lines, we demonstrate that the p53-induced transcriptome varies by cell type, reflects cell type-specific activities, and is considerably broader than previously anticipated. We found that these molecular events are strongly influenced by p53's engagement with differentially active cell type-specific enhancers and promoters. We also observed that p53 activity depends on the p53 family member tumor protein p63 in epithelial cell types. Notably, we demonstrate that p63 is required for epithelial enhancer identity, including enhancers used by p53 during stress-dependent signaling. Loss of p63, but not p53, caused site-specific depletion of enhancer-associated chromatin modifications, suggesting that p63 functions as an enhancer maintenance factor in epithelial cells. Additionally, a subset of epithelial-specific enhancers depends on the activity of p63 providing a direct link between lineage determination and enhancer structure. These results suggest that a broad, cell-intrinsic mechanism controls p53-dependent cellular stress response through differential regulation of -regulatory elements.

摘要

p53 的转录激活提供了强大的、全器官范围的肿瘤抑制作用。我们假设,局部染色质环境,包括差异增强子活性,有助于在应激诱导的信号转导过程中不同细胞类型中各种 p53 依赖性转录活性。在这项工作中,我们使用 ChIP-seq、免疫印迹、定量 PCR 和各种哺乳动物细胞系的计算分析,证明 p53 诱导的转录组因细胞类型而异,反映细胞类型特异性活性,并且比以前预期的要广泛得多。我们发现这些分子事件强烈受到 p53 与差异激活的细胞类型特异性增强子和启动子结合的影响。我们还观察到,p53 的活性取决于上皮细胞类型中 p53 家族成员肿瘤蛋白 p63。值得注意的是,我们证明 p63 是上皮细胞增强子身份所必需的,包括 p53 在应激依赖性信号转导过程中使用的增强子。p63 的缺失,但不是 p53 的缺失,导致增强子相关染色质修饰的特异性耗竭,表明 p63 在上皮细胞中作为增强子维持因子发挥作用。此外,一组上皮特异性增强子依赖于 p63 的活性,为谱系决定和增强子结构之间提供了直接联系。这些结果表明,一种广泛的、细胞内在的机制通过差异调节 -调节元件来控制 p53 依赖性细胞应激反应。

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