School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China.
Nucleic Acids Res. 2019 Aug 22;47(14):7592-7604. doi: 10.1093/nar/gkz467.
To cope with harsh circumstances, bacterial cells must initiate cellular stress response programs, which demands the de novo synthesis of many stress defense proteins. Reactive oxygen species (ROS) is a universal environmental stressor for both prokaryotic cells and eukaryotic cells. However, the physiological burden that limits the survival of bacterial cells during oxidative stress remains elusive. Here we quantitatively characterize the cell growth and translational elongation rate of Escherichia coli cells treated with different doses of hydrogen peroxide. Cell growth is immediately arrested by low to moderate levels of hydrogen peroxide, but completely recovers after a certain lag time. The lag time depends positively on the dose of hydrogen peroxide. During the lag time, translational elongation rate drops by as much as ∼90% at initial stage and recovers to its normal state later, a phenomenon resulting from the dramatic alteration in cellular tRNA pools during oxidative stress. However, translational elongation is completely stalled at a certain threshold-level of hydrogen peroxide, at which cells ultimately fail to resume growth. Although the mRNA transcription of oxidative defense genes in oxyR regulon is dramatically induced upon hydrogen peroxide treatment, the extreme slow-down of translational elongation during high levels of hydrogen peroxide has severely compromised the timely synthesis of those oxidative defense proteins. Our study demonstrates that the tRNA-limited translational elongation is a key physiological bottleneck that the bacteria must overcome to counteract ROS, and the maintenance of translational elongation rate for timely synthesis of stress defense proteins is crucial for cells to smoothly get over the oxidative stress.
为了应对恶劣环境,细菌细胞必须启动细胞应激反应程序,这需要大量新合成应激防御蛋白。活性氧(ROS)是原核细胞和真核细胞普遍存在的环境胁迫因子。然而,限制细菌细胞在氧化应激过程中存活的生理负担仍然难以捉摸。在这里,我们定量描述了用不同剂量过氧化氢处理的大肠杆菌细胞的细胞生长和翻译延伸率。低至中等水平的过氧化氢会立即抑制细胞生长,但在一定的延迟时间后完全恢复。延迟时间与过氧化氢的剂量呈正相关。在延迟时间内,翻译延伸率在初始阶段下降多达约 90%,随后恢复正常状态,这是由于氧化应激期间细胞 tRNA 池的剧烈变化所致。然而,在一定的过氧化氢阈值水平,翻译延伸完全停滞,细胞最终无法恢复生长。尽管过氧化氢处理会显著诱导 oxyR 调控基因簇中氧化防御基因的转录,但在高浓度过氧化氢下,翻译延伸的极端减缓严重限制了这些氧化防御蛋白的及时合成。我们的研究表明,tRNA 限制的翻译延伸是细菌必须克服 ROS 的关键生理瓶颈,维持翻译延伸率以及时合成应激防御蛋白对于细胞顺利度过氧化应激至关重要。