Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou 225009, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China.
Jiangsu Key Laboratory of Crop Genetics and Physiology/Key Laboratory of Plant Functional Genomics of the Ministry of Education/Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou 225009, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China; Agricultural College, Qingdao Agricultural University, Qingdao 266109, China.
Mol Phylogenet Evol. 2019 Sep;138:205-218. doi: 10.1016/j.ympev.2019.05.031. Epub 2019 May 24.
Colonization of the land by plants was a critical event in the establishment of modern terrestrial ecosystems, and many characteristics of land plants originated during this process, including the emergence of rosette terminal cellulose-synthesizing complexes. Cellulases are non-homologous isofunctional enzymes, encoded by glycosyl hydrolase (GH) gene families. Although the plant GH5_11 gene subfamily is presumed to encode a cell-wall degrading enzyme, its evolutionary and functional characteristics remain unclear. In the present study, we report the evolution of the land plant GH5_11 subfamily, and the functions of its members in terms of cellulase activity, through comprehensive phylogenetic analyses and observation of Arabidopsis mutants. Phylogenetic and sequence similarity analyses reveal that the ancestor of land plants acquired the GH5_11 gene from fungi through a horizontal gene transfer (HGT) event. Subsequently, positive selection with massive gene duplication and loss events contributed to the evolution of this subfamily in land plants. In Arabidopsis and rice, expression of GH5_11 genes are regulated by multiple abiotic stresses, the duplicated genes showing different patterns of expression. The Arabidopsis mutants atgh5_11a and atgh5_11c display low levels of cellulase and endoglucanase activities, with correspondingly high levels of cellulose, implying that the encoded proteins may function as endoglucanases. However, atgh5_11a and atgh5_11c also display an enlarged rosette leaf phenotype, and atgh5_11c is late-flowering under short photoperiods. These observations suggest that plant GH5_11s possess more functions beyond being endonucleases. To summarize, we demonstrate that the ancestor of land plants has acquired GH5_11 gene through HGT, which extends the cellulose degradation complexity. Our investigations illuminate features of part of the molecular framework underlying the origin of land plants and provide a focus on the cellulose degradation pathway.
植物对陆地的定殖是现代陆地生态系统建立的一个关键事件,陆地植物的许多特征起源于这一过程,包括头状花序末端纤维素合成复合物的出现。纤维素酶是非同源同工酶,由糖苷水解酶(GH)基因家族编码。虽然植物 GH5_11 基因亚家族被认为编码细胞壁降解酶,但它的进化和功能特征仍不清楚。在本研究中,我们通过综合系统发育分析和拟南芥突变体观察,报道了陆地植物 GH5_11 亚家族的进化,以及其成员在纤维素酶活性方面的功能。系统发育和序列相似性分析表明,陆地植物的祖先通过水平基因转移(HGT)事件从真菌中获得了 GH5_11 基因。随后,正选择和大量基因的复制和丢失事件导致了该亚家族在陆地植物中的进化。在拟南芥和水稻中,GH5_11 基因的表达受到多种非生物胁迫的调控,复制基因表现出不同的表达模式。拟南芥 atgh5_11a 和 atgh5_11c 突变体的纤维素酶和内切葡聚糖酶活性较低,而纤维素含量较高,这表明编码蛋白可能作为内切葡聚糖酶发挥作用。然而,atgh5_11a 和 atgh5_11c 也表现出较大的莲座叶表型,atgh5_11c 在短光照条件下开花较晚。这些观察结果表明,植物 GH5_11 具有更多的功能,不仅仅是作为内切酶。总之,我们证明了陆地植物的祖先通过 HGT 获得了 GH5_11 基因,这扩展了纤维素降解的复杂性。我们的研究阐明了陆地植物起源的分子框架的部分特征,并为纤维素降解途径提供了一个研究重点。