China General Microbiological Culture Collection Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.
State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China.
Int J Syst Evol Microbiol. 2019 Aug;69(8):2329-2334. doi: 10.1099/ijsem.0.003471. Epub 2019 May 28.
A novel Gram-stain-positive, non-motile, rod-shaped, non-spore-forming bacterium, designated HLT2-9, was isolated from the ice tongue surface of Hailuogou Glacier in Sichuan Province, PR China. Colonies of cells were cream yellow, convex and round. Growth occurred at 0-27 °C (optimum, 20 °C), pH 7.0-10.0 (pH 7.0) and in the presence of 0-2.0 % (w/v) NaCl (0 %). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain HLT2-9 belonged to the genus Nocardioides. The highest level of sequence similarities were found to Nocardioides glacieisoli CGMCC1.11097 (99.24 %), Nocardioides oleivorans CGMCC 4.6882 (98.54 %) and Nocardioides ganghwensis CGMCC 4.6875 (98.54 %). However, the low average nucleotide identity (85.6-87.9 %) and digital DNA-DNA hybridization values (26.4-30.2 %) of strain HLT2-9 to its three closest relatives demonstrated that it represents a novel species of the genus Nocardioides. The major cellular fatty acids of strain HLT2-9 were C17 : 1ω8c and iso-C16 : 0. Strain HLT2-9 contained ll-2,6-diaminopimelic acid as the diamino acid in the cell-wall peptidoglycan. The predominant menaquinone is MK-8(H4). The G+C content of the genomic DNA was 70.65 mol%. Based on evidence collected from the phenotypic, genotypic and phylogenetic analyses, a novel species Nocardioideszhouii sp. nov. is proposed, with HLT2-9 (=CGMCC 1.11084=NBRC 109783) as the type strain.
一株新型革兰氏阳性、非运动、杆状、非孢子形成的细菌,被命名为HLT2-9,从中国四川省海螺沟冰川的冰舌表面分离得到。细胞菌落呈奶油黄色,凸起且呈圆形。生长在 0-27°C(最佳温度为 20°C),pH 值为 7.0-10.0(pH 值为 7.0),并且在 0-2.0%(w/v)NaCl(0%)存在的情况下。基于 16S rRNA 基因序列的系统发育分析表明,菌株 HLT2-9 属于诺卡氏菌属。与 Nocardioides glacieisoli CGMCC1.11097(99.24%)、Nocardioides oleivorans CGMCC 4.6882(98.54%)和 Nocardioides ganghwensis CGMCC 4.6875(98.54%)的序列相似度最高。然而,HLT2-9 与三个最接近的亲缘关系菌株的平均核苷酸同一性(85.6-87.9%)和数字 DNA-DNA 杂交值(26.4-30.2%)较低,表明它代表了诺卡氏菌属的一个新种。HLT2-9 菌株的主要细胞脂肪酸为 C17:1ω8c 和 iso-C16:0。菌株 HLT2-9 的细胞壁肽聚糖中含有 ll-2,6-二氨基庚二酸作为二氨基酸。主要的menaquinone 是 MK-8(H4)。基因组 DNA 的 G+C 含量为 70.65mol%。基于表型、基因型和系统发育分析收集的证据,提出了一种新型的诺卡氏菌属 Nocardioideszhouii sp. nov.,HLT2-9(=CGMCC 1.11084=NBRC 109783)作为模式菌株。