State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China.
Department of Epidemiology, Shanxi Medical University School of Public Health Taiyuan, Shanxi 030001, PR China.
Int J Syst Evol Microbiol. 2020 May;70(5):3234-3240. doi: 10.1099/ijsem.0.004161.
Two novel Gram-stain-positive, irregular rod-shaped actinomycetes, S-1144 and 4053, were isolated from leaves of on the Qinghai-Tibet Plateau, PR China. Cells were aerobic, catalase-positive and oxidase-negative. Colonies on Reasoner's 2A agar were light yellow, circular, shiny, smooth and convex after 2 days of incubation. The isolates grew optimally at 25 °C, pH 7.5 and with 0 % (w/v) NaCl. The results of polyphasic analyses indicated that strain S-1144 belonged to the genus and its close phylogenetic neighbours (16S rRNA gene sequence similarity) were DSM 103718 (98.4 %), DSM 23986 (98.2%) and DSM 11054 (97.8 %). The genome of strain S-1144 showed less than 70 % digital DNA-DNA hybridization and < 95-96 % average nucleotide identity values to the above reference strains. The DNA G+C content of strain S-1144 was 73.5 mol%. MK-8(H) was the predominant respiratory quinone (96.0 %) and llLL-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan. The polar lipid profile of strain S-1144 consisted of diphosphatidylglycerol, phosphatidylglycerol, three unidentified phospholipids, one unidentified glycolipid and one unidentified lipid. The major cellular fatty acids were iso-C, C 8, C and C 9. On the basis of obtained data, strain S-1144 represented a novel species of the genus , for which the name sp. nov. is proposed. The type strain is S-1144 (=CGMCC 4.7568=JCM 33469).
两株新型革兰氏阳性、不规则棒状放线菌 S-1144 和 4053 从中国青藏高原的叶片上分离出来。细胞为需氧型,过氧化氢酶阳性,氧化酶阴性。在 Reasoner's 2A 琼脂上培养 2 天后,菌落呈浅黄色、圆形、有光泽、光滑、凸起。分离株在 25°C、pH7.5 和 0%(w/v)NaCl 下生长最佳。多相分析结果表明,菌株 S-1144 属于 属,其密切的系统发育近邻(16S rRNA 基因序列相似性)为 DSM 103718(98.4%)、DSM 23986(98.2%)和 DSM 11054(97.8%)。菌株 S-1144 的基因组显示其与上述参考菌株的数字 DNA-DNA 杂交率小于 70%,平均核苷酸同一性值小于 95-96%。菌株 S-1144 的 DNA G+C 含量为 73.5mol%。MK-8(H) 是主要的呼吸醌(96.0%),细胞壁肽聚糖中的特征二氨基庚二酸是 llLL-2,6-二氨基庚二酸。菌株 S-1144 的极性脂谱由双磷脂酰甘油、磷脂酰甘油、三种未鉴定的磷脂、一种未鉴定的糖脂和一种未鉴定的脂组成。主要的细胞脂肪酸为 iso-C、C 8、C 14:0 和 C 16:0。基于获得的数据,菌株 S-1144 代表了 属的一个新种,建议将其命名为 sp. nov.。模式菌株为 S-1144(=CGMCC 4.7568=JCM 33469)。