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在拟南芥体细胞的 DNA 去甲基化和疾病反应中发挥作用。

plays a role in DNA demethylation and disease response in somatic tissues of Arabidopsis.

机构信息

CSIRO Agriculture and Food , Acton , Australia.

Department of Horticulture and Landscape Architecture, Purdue University , West Lafayette , IN , USA.

出版信息

Epigenetics. 2019 Nov;14(11):1074-1087. doi: 10.1080/15592294.2019.1631113. Epub 2019 Jun 19.

Abstract

DNA demethylases function in conjunction with DNA methyltransferases to modulate genomic DNA methylation levels in plants. The Arabidopsis genome contains four DNA demethylase genes, ( () also known as ( and . While and were shown to function in disease response in somatic tissues, has been thought to function only in reproductive tissues to maintain the maternal-specific expression pattern of a subset of imprinted genes. Here we used promoter:β-glucuronidase (GUS) fusion constructs to show that is constitutively expressed throughout the plant, and that and have tissue-specific expression patterns. Loss-of-function mutations in cause seed abortion and therefore viable mutants are not available for gene function analysis. We knocked down expression in a triple () mutant background using green tissue-specific expression of a hairpin RNA transgene (RNAi), generating a viable 'quadruple' demethylase mutant line. We show that this RNAi line has enhanced disease susceptibility to infection compared to the triple mutant. Furthermore, several defence-related genes, previously shown to be repressed in , were further repressed in the RNAi plants. DNA methylation analysis of two of these genes revealed increased differential promoter DNA methylation in RNAi plants compared to WT, beyond the difference observed in the parental plants. These results indicate that contributes to DNA demethylase activity and disease response in somatic tissues.

摘要

DNA 去甲基化酶与 DNA 甲基转移酶协同作用,调节植物基因组 DNA 的甲基化水平。拟南芥基因组包含四个 DNA 去甲基化酶基因,也被称为和。虽然和被证明在体细胞组织的疾病反应中起作用,但被认为仅在生殖组织中起作用,以维持一组印迹基因的母系特异性表达模式。在这里,我们使用启动子:β-葡萄糖醛酸酶(GUS)融合构建体表明,在整个植物中持续表达,和具有组织特异性表达模式。的功能丧失突变导致种子流产,因此没有可行的突变体可用于基因功能分析。我们使用绿色组织特异性表达发夹 RNA 转基因(RNAi)在三重()突变背景下敲低的表达,产生了可行的“四重”去甲基化酶突变体系。我们表明,与三重突变体相比,该 RNAi 系对感染的易感性增强。此外,先前在中被抑制的几个与防御相关的基因在 RNAi 植物中进一步被抑制。对其中两个基因的 DNA 甲基化分析表明,与 WT 相比,RNAi 植物中的差异启动子 DNA 甲基化增加,超过了在亲本植物中观察到的差异。这些结果表明在体细胞组织中,参与 DNA 去甲基化酶活性和疾病反应。

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DNA demethylation in the Arabidopsis genome.拟南芥基因组中的DNA去甲基化
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