向日葵异质细胞质雄性不育系叶绿体基因组多态性位点的数据。
Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines.
作者信息
Azarin Kirill, Makarenko Maksim, Usatov Alexander, Gorbachenko Oleg, Kovalevich Alexey, Gavrilova Vera
机构信息
Southern Federal University, Rostov-on-Don, Russia.
Zlhdanov Don Experiment Station, All Russia Research Institute of Oil Crops, pos. Oporny, Rostov region, Russia.
出版信息
Data Brief. 2019 May 26;25:104072. doi: 10.1016/j.dib.2019.104072. eCollection 2019 Aug.
Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - , ANN2 - ) and perennial (MAX1 - ) species of the genus L. The chloroplast genomes were annotated. Also presented is a dataset of variable sites such as single nucleotide polymorphism (SNP), simple sequence repeat (SSR), insertion and deletion (INDEL) in the chloroplast genome of the sequenced alloplasmic lines. The raw reads are available in FIGSHARE (https://doi.org/10.6084/m9.figshare.7520183). The complete chloroplast genome sequences for the sunflower alloplasmic lines are available in GenBank NCBI under the accessions MK341448.1-MK341452.1; the remaining data are provided with this article.
数据展示了使用Illumina MiSeq、HiSeq和NextSeq平台获得的五个向日葵异质细胞质雄性不育（CMS）系的叶绿体基因组序列。向日葵异质CMS系具有来自HA89系的相同核基因组，但它们的细胞质基因组不同，分别继承自向日葵属的一年生（PET1、PET2 - 、ANN2 - ）和多年生（MAX1 - ）物种。对叶绿体基因组进行了注释。还展示了一个数据集，包含测序异质系叶绿体基因组中的可变位点，如单核苷酸多态性（SNP）、简单序列重复（SSR）、插入和缺失（INDEL）。原始读数可在FIGSHARE（https://doi.org/10.6084/m9.figshare.7520183）获取。向日葵异质系的完整叶绿体基因组序列可在GenBank NCBI中获取，登录号为MK341448.1 - MK341452.1；其余数据随本文提供。
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