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在晚期人类卵巢癌中高效鉴定新抗原特异性 T 细胞反应。

Efficient identification of neoantigen-specific T-cell responses in advanced human ovarian cancer.

机构信息

Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, 14263, USA.

Center for Immunotherapy, Roswell Park Comprehensive Cancer Center, Buffalo, NY, 14263, USA.

出版信息

J Immunother Cancer. 2019 Jun 20;7(1):156. doi: 10.1186/s40425-019-0629-6.


DOI:10.1186/s40425-019-0629-6
PMID:31221207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6587259/
Abstract

BACKGROUND: Efficient identification of neoantigen-specific T-cell responses in epithelial ovarian cancer (EOC) remains a challenge. Existing investigations of spontaneous T-cell response to tumor neoepitope in EOC have taken the approach of comprehensive screening all neoantigen candidates, with a validation rate of 0.5-2%. METHODS: Whole-exome and transcriptome sequencing analysis of treatment-naive EOC patients were performed to identify neoantigen candidates, and the immunogenicity of prioritized neoantigens was evaluated by analyzing spontaneous neoantigen-specfic CD4 and CD8 T-cell responses in the tumor and/or peripheral blood. The biological relevance of neoantigen-specific T-cell lines and clones were analyzed by evaluating the capacity of autologous ovarian tumor recognition. Genetic transfer of T-cell receptor (TCR) from these neoantigen-specific T-cell clones into peripheral blood T-cells was conducted to generate neoepitope-specific T-cells. The molecular signature associated with positive neoantigen T-cell responses was investigated, and the impacts of expression level and lymphocyte source on neoantigen identification were explored. RESULTS: Using a small subset of prioritized neoantigen candidates, we were able to detect spontaneous CD4 and/or CD8 T-cell responses against neoepitopes from autologous lymphocytes in half of treatment-naïve EOC patients, with a significantly improved validation rate of 19%. Tumors from patients exhibiting neoantigen-specific T-cell responses exhibited a signature of upregulated antigen processing and presentation machinery, which was also associated with favorable patient survival in the TCGA ovarian cohort. T-cells specific against two mutated cancer-associated genes, NUP214 and JAK1, recognized autologous tumors. Gene-engineering with TCR from these neoantigen-specific T-cell clones conferred neoantigen-reactivity to peripheral T-cells. CONCLUSIONS: Our study demonstrated the feasibility of efficiently identifying both CD4 and CD8 neoantigen-specific T-cells in EOC. Autologous lymphocytes genetically engineered with tumor antigen-specific TCR can be used to generate cells for use in the personalized adoptive T-cell transfer immunotherapy.

摘要

背景:高效鉴定上皮性卵巢癌(EOC)中的肿瘤新抗原特异性 T 细胞反应仍然是一个挑战。现有的 EOC 肿瘤新抗原自发 T 细胞反应研究采用全面筛选所有新抗原候选物的方法,验证率为 0.5-2%。

方法:对未经治疗的 EOC 患者进行全外显子组和转录组测序分析,以鉴定新抗原候选物,并通过分析肿瘤和/或外周血中优先新抗原特异性 CD4 和 CD8 T 细胞反应来评估优先新抗原的免疫原性。通过评估自体卵巢肿瘤识别能力来分析新抗原特异性 T 细胞系和克隆的生物学相关性。将这些新抗原特异性 T 细胞克隆的 T 细胞受体(TCR)从遗传上转移到外周血 T 细胞中,以产生新表位特异性 T 细胞。研究了与新抗原 T 细胞反应阳性相关的分子特征,并探讨了表达水平和淋巴细胞来源对新抗原鉴定的影响。

结果:使用一小部分优先新抗原候选物,我们能够在一半未经治疗的 EOC 患者的自体淋巴细胞中检测到针对新表位的自发 CD4 和/或 CD8 T 细胞反应,验证率显著提高到 19%。表现出新抗原特异性 T 细胞反应的肿瘤表现出抗原加工和呈递机制上调的特征,这也与 TCGA 卵巢队列中患者的良好生存相关。针对两个突变的癌症相关基因 NUP214 和 JAK1 的 T 细胞识别自体肿瘤。用这些新抗原特异性 T 细胞克隆的 TCR 基因工程赋予外周 T 细胞新抗原反应性。

结论:本研究证明了在上皮性卵巢癌中高效鉴定 CD4 和 CD8 新抗原特异性 T 细胞的可行性。用肿瘤抗原特异性 TCR 基因工程改造的自体淋巴细胞可用于生成用于个性化过继性 T 细胞转移免疫治疗的细胞。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/edd57194965e/40425_2019_629_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/8ae70cb2240f/40425_2019_629_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ebdce3a49df0/40425_2019_629_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ad643e94310a/40425_2019_629_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ee31cab5db73/40425_2019_629_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/edd57194965e/40425_2019_629_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/8ae70cb2240f/40425_2019_629_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ebdce3a49df0/40425_2019_629_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ad643e94310a/40425_2019_629_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/ee31cab5db73/40425_2019_629_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6037/6587259/edd57194965e/40425_2019_629_Fig5_HTML.jpg

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引用本文的文献

[1]
Immunotherapy for Platinum-Resistant Ovarian Cancer as a Glimmer of Hope.

Cells. 2025-6-29

[2]
High-grade serous ovarian cancer development and anti-PD-1 resistance is driven by IRE1α activity in neutrophils.

Oncoimmunology. 2024

[3]
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[4]
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[5]
Stimulating T cell responses against patient-derived breast cancer cells with neoantigen peptide-loaded peripheral blood mononuclear cells.

Cancer Immunol Immunother. 2024-2-13

[6]
NLRC5 overexpression in ovarian tumors remodels the tumor microenvironment and increases T-cell reactivity toward autologous tumor-associated antigens.

Front Immunol. 2023

[7]
Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes.

Proc Natl Acad Sci U S A. 2023-12-19

[8]
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J Immunother Cancer. 2023-9

[9]
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J Natl Cancer Inst. 2023-11-8

[10]
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本文引用的文献

[1]
A Pilot Trial of the Combination of Transgenic NY-ESO-1-reactive Adoptive Cellular Therapy with Dendritic Cell Vaccination with or without Ipilimumab.

Clin Cancer Res. 2018-12-20

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Enhanced detection of neoantigen-reactive T cells targeting unique and shared oncogenes for personalized cancer immunotherapy.

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