Anderson David F, Cappelletti Daniele
Department of Mathematics, University of Wisconsin-Madison, Madison, USA.
Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
J Math Biol. 2019 Sep;79(4):1253-1277. doi: 10.1007/s00285-019-01394-9. Epub 2019 Jun 22.
Reaction networks are mathematical models of interacting chemical species that are primarily used in biochemistry. There are two modeling regimes that are typically used, one of which is deterministic and one that is stochastic. In particular, the deterministic model consists of an autonomous system of differential equations, whereas the stochastic system is a continuous-time Markov chain. Connections between the two modeling regimes have been studied since the seminal paper by Kurtz (J Chem Phys 57(7):2976-2978, 1972), where the deterministic model is shown to be a limit of a properly rescaled stochastic model over compact time intervals. Further, more recent studies have connected the long-term behaviors of the two models when the reaction network satisfies certain graphical properties, such as weak reversibility and a deficiency of zero. These connections have led some to conjecture a link between the long-term behavior of the two models exists, in some sense. In particular, one is tempted to believe that positive recurrence of all states for the stochastic model implies the existence of positive equilibria in the deterministic setting, and that boundary equilibria of the deterministic model imply the occurrence of an extinction event in the stochastic setting. We prove in this paper that these implications do not hold in general, even if restricting the analysis to networks that are bimolecular and that conserve the total mass. In particular, we disprove the implications in the special case of models that have absolute concentration robustness, thus answering in the negative a conjecture stated in the literature in 2014.
反应网络是相互作用的化学物质的数学模型,主要用于生物化学领域。通常使用两种建模方式,一种是确定性的,另一种是随机性的。具体而言,确定性模型由一个自治的微分方程组组成,而随机系统是一个连续时间马尔可夫链。自库尔茨的开创性论文(《化学物理杂志》57(7):2976 - 2978,1972年)发表以来,人们就一直在研究这两种建模方式之间的联系,该论文表明在紧凑的时间间隔内,确定性模型是适当缩放后的随机模型的极限。此外,最近的研究在反应网络满足某些图形性质(如弱可逆性和零亏度)时,将这两种模型的长期行为联系了起来。这些联系使得一些人推测在某种意义上,这两种模型的长期行为之间存在关联。特别是,有人倾向于认为随机模型所有状态的正递归意味着确定性设置中存在正平衡点,并且确定性模型的边界平衡点意味着随机设置中发生灭绝事件。我们在本文中证明,即使将分析限制在双分子且总质量守恒的网络中,这些推断通常也不成立。特别是,我们在具有绝对浓度鲁棒性的模型的特殊情况下反驳了这些推断,从而对2014年文献中提出的一个猜想给出了否定的回答。