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酵母转录激活因子GAL4的协同DNA结合

Cooperative DNA binding of the yeast transcriptional activator GAL4.

作者信息

Giniger E, Ptashne M

机构信息

Department of Biochemistry and Molecular Biology, Harvard University, Cambridge, MA 02138.

出版信息

Proc Natl Acad Sci U S A. 1988 Jan;85(2):382-6. doi: 10.1073/pnas.85.2.382.

DOI:10.1073/pnas.85.2.382
PMID:3124106
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC279552/
Abstract

The yeast transcriptional regulatory protein GAL4 binds to four sites in the GAL upstream activating sequence and stimulates transcription of the adjacent GAL1 and GAL10 genes. We show here that binding to at least two of these sites is cooperative in vivo. We also measure stimulation of transcription by pairs of GAL4 binding sites and find that the activities of low-affinity binding sites combine synergistically, whereas the activities of high-affinity binding sites combine only additively. We suggest that the synergistic transcriptional stimulatory activity of the naturally occurring GAL4 binding sites is solely a manifestation of cooperative binding of GAL4 protein to DNA and that the activity of a GAL upstream activating sequence is roughly proportional to the number of GAL4 molecules bound.

摘要

酵母转录调节蛋白GAL4与GAL上游激活序列中的四个位点结合,并刺激相邻的GAL1和GAL10基因的转录。我们在此表明,在体内与这些位点中的至少两个位点的结合是协同的。我们还测量了成对的GAL4结合位点对转录的刺激作用,发现低亲和力结合位点的活性协同组合,而高亲和力结合位点的活性仅以相加方式组合。我们认为,天然存在的GAL4结合位点的协同转录刺激活性仅仅是GAL4蛋白与DNA协同结合的一种表现,并且GAL上游激活序列的活性大致与结合的GAL4分子数量成正比。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/e591526c30d0/pnas00254-0093-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/385f42d1ec49/pnas00254-0092-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/f13f84cdb700/pnas00254-0092-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/7ad500a93c54/pnas00254-0093-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/e591526c30d0/pnas00254-0093-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/385f42d1ec49/pnas00254-0092-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/f13f84cdb700/pnas00254-0092-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/7ad500a93c54/pnas00254-0093-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fe9/279552/e591526c30d0/pnas00254-0093-b.jpg

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Cooperative DNA binding of the yeast transcriptional activator GAL4.酵母转录激活因子GAL4的协同DNA结合
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本文引用的文献

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A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site.一个GAL10-CYC1杂交酵母启动子将GAL4调控区域鉴定为一个上游位点。
Proc Natl Acad Sci U S A. 1982 Dec;79(23):7410-4. doi: 10.1073/pnas.79.23.7410.
2
Transformation of intact yeast cells treated with alkali cations.经碱金属阳离子处理的完整酵母细胞的转化
J Bacteriol. 1983 Jan;153(1):163-8. doi: 10.1128/jb.153.1.163-168.1983.
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Genomic sequencing.基因组测序
单分子荧光揭示RNA聚合酶II转录激活中协同介质募集的机制
bioRxiv. 2024 Dec 11:2024.12.10.627625. doi: 10.1101/2024.12.10.627625.
4
Single-molecule states link transcription factor binding to gene expression.单分子状态将转录因子结合与基因表达联系起来。
Nature. 2024 Dec;636(8043):745-754. doi: 10.1038/s41586-024-08219-w. Epub 2024 Nov 20.
5
A DNA base-specific sequence interposed between CRX and NRL contributes to RHODOPSIN expression.CRX 和 NRL 之间插入的特定 DNA 碱基序列有助于视紫红质的表达。
Sci Rep. 2024 Nov 1;14(1):26313. doi: 10.1038/s41598-024-76664-8.
6
Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors.重新审视辅激活因子募集模型:Med15 可以独立于启动子结合转录因子选择其靶位。
Nucleic Acids Res. 2024 Nov 11;52(20):12093-12111. doi: 10.1093/nar/gkae718.
7
Transcription factor exchange enables prolonged transcriptional bursts.转录因子交换使转录爆发得以延长。
Mol Cell. 2024 Mar 21;84(6):1036-1048.e9. doi: 10.1016/j.molcel.2024.01.020. Epub 2024 Feb 19.
8
Single-molecule chromatin configurations link transcription factor binding to expression in human cells.单分子染色质构型将转录因子结合与人类细胞中的基因表达联系起来。
bioRxiv. 2024 Feb 4:2024.02.02.578660. doi: 10.1101/2024.02.02.578660.
9
Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode.锌簇转录因子通常使用非经典的半位点结合模式激活靶基因。
Nucleic Acids Res. 2023 Jun 9;51(10):5006-5021. doi: 10.1093/nar/gkad320.
10
Transcription factor clusters enable target search but do not contribute to target gene activation.转录因子簇可实现靶基因搜索,但不促进靶基因激活。
Nucleic Acids Res. 2023 Jun 23;51(11):5449-5468. doi: 10.1093/nar/gkad227.
Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5. doi: 10.1073/pnas.81.7.1991.
4
The organization and transcription of the galactose gene cluster of Saccharomyces.酿酒酵母半乳糖基因簇的组织与转录
J Mol Biol. 1981 Oct 25;152(2):285-315. doi: 10.1016/0022-2836(81)90244-8.
5
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6
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
7
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Methods Enzymol. 1983;100:468-500. doi: 10.1016/0076-6879(83)00074-9.
8
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10
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Mol Gen Genet. 1974;135(3):203-12. doi: 10.1007/BF00268616.