School of Physical Sciences & Computing , University of Central Lancashire , Preston PR1 2HE , United Kingdom.
Department of Organic Chemistry , University of Debrecen , POB 400 , H-4002 Debrecen , Hungary.
ACS Chem Biol. 2019 Jul 19;14(7):1460-1470. doi: 10.1021/acschembio.9b00172. Epub 2019 Jun 19.
Several -β-d-glucopyranosyl azoles have recently been uncovered as among the most potent glycogen phosphorylase (GP) catalytic site inhibitors discovered to date. Toward further exploring their translational potential, experiments have been performed for their effectiveness in reduction of glycogenolysis in hepatocytes. New compounds for these experiments were predicted where, for the first time, effective ranking of GP catalytic site inhibitor potencies using the molecular mechanics-generalized Born surface area (MM-GBSA) method has been demonstrated. For a congeneric training set of 27 ligands, excellent statistics in terms of Pearson () and Spearman () correlations (both 0.98), predictive index (PI = 0.99), and area under the receiver operating characteristic curve (AU-ROC = 0.99) for predicted versus experimental binding affinities were obtained, with ligand tautomeric/ionization states additionally considered using density functional theory (DFT). Seven 2-aryl-4(5)-(β-d-glucopyranosyl)-imidazoles and 2-aryl-4-(β-d-glucopyranosyl)-thiazoles were subsequently synthesized, and kinetics experiments against rabbit muscle GPb revealed new potent inhibitors with best values in the low micromolar range ( = 1.97 μM; = 4.58 μM). Ten -β-d-glucopyranosyl azoles were then tested in mouse primary hepatocytes. Four of these (- and ) demonstrated significant reduction of glucagon stimulated glycogenolysis (IC = 30-60 μM). Structural and predicted physicochemical properties associated with their effectiveness were analyzed with permeability related parameters identified as crucial factors. The most effective ligand series contained an imidazole ring, and the calculated p (Epik: 6.2; Jaguar 5.5) for protonated imidazole suggests that cellular permeation through the neutral state is favored, while within the cell, there is predicted more favorable binding to GP in the protonated form.
最近发现,几种β-D-葡萄糖基唑类化合物是迄今为止发现的最有效的糖原磷酸化酶(GP)催化部位抑制剂之一。为了进一步探索它们的转化潜力,已经进行了实验以研究它们在肝细胞中减少糖原分解的效果。这些实验的新化合物是通过分子力学-广义 Born 表面积(MM-GBSA)方法首次有效预测 GP 催化部位抑制剂效力来预测的。对于 27 个配体的同源训练集,获得了极好的 Pearson()和 Spearman()相关系数(均为 0.98)、预测指数(PI=0.99)和接收者操作特征曲线下的面积(AU-ROC=0.99)的统计数据,用于预测与实验结合亲和力,另外还考虑了配体互变异构/电离态,使用密度泛函理论(DFT)。随后合成了 7 种 2-芳基-4(5)-(β-D-葡萄糖基)-咪唑和 2-芳基-4-(β-D-葡萄糖基)-噻唑,并对兔肌肉 GPb 进行了动力学实验,结果发现了新的强效抑制剂,其最佳值在低微摩尔范围内(=1.97 μM;=4.58 μM)。然后对 10 种β-D-葡萄糖基唑类化合物在小鼠原代肝细胞中进行了测试。其中四种(和)显示出对胰高血糖素刺激的糖原分解有显著抑制作用(IC=30-60 μM)。分析了与它们的有效性相关的结构和预测物理化学性质,并确定了与通透性相关的参数作为关键因素。最有效的配体系列含有咪唑环,计算出的质子化咪唑的 p(Epik:6.2;Jaguar 5.5)表明,通过中性状态穿过细胞的渗透是有利的,而在细胞内,预测质子化形式与 GP 的结合更有利。