利用泛蛋白质组反向疫苗学方法寻找针对……的疫苗。 (原文中“against”后缺少具体内容)

Fishing for vaccines against using pan-proteomic reverse vaccinology approach.

作者信息

Rashid Muhammad I, Rehman Sammia, Ali Amjad, Andleeb Saadia

机构信息

Department of Industrial Biotechnology, Atta ur Rahman School of Applied Biosciences, National University of Science and Technology, Islamabad, Pakistan.

出版信息

PeerJ. 2019 Jun 19;7:e6223. doi: 10.7717/peerj.6223. eCollection 2019.

Abstract

BACKGROUND

Cholera, an acute enteric infection, is a serious health challenge in both the underdeveloped and the developing world. It is caused by after ingestion of fecal contaminated food or water. Cholera outbreaks have recently been observed in regions facing natural calamities (i.e., earthquake in Haiti 2010) or war (i.e., ongoing civil war in Yemen 2016) where healthcare and sanitary setups have been disrupted as a consequence. Whole-cell oral cholera vaccines (OCVs) have been in market but their regimen efficacy has been questioned. A reverse vaccinology (RV) approach has been applied as a successful anti-microbial measure for many infectious diseases.

METHODOLOGY

With the aim of finding new protective antigens for vaccine development, the O1 (biovar eltr str. N16961) proteome was computationally screened in a sequential prioritization approach that focused on determining the antigenicity of potential vaccine candidates. Essential, accessible, virulent and immunogenic proteins were selected as potential candidates. The predicted epitopes were filtered for effective binding with MHC alleles and epitopes binding with greater MHC alleles were selected.

RESULTS

In this study, we report lipoprotein , outer membrane protein , accessory colonization factor , Porin, putative and outer membrane protein as potential candidates qualifying all the set criteria. These predicted epitopes can offer a potential for development of a reliable peptide or subunit vaccine for .

摘要

背景

霍乱是一种急性肠道感染病,在不发达国家和发展中国家都是严重的健康挑战。它是由于摄入受粪便污染的食物或水后引起的。最近在面临自然灾害(如2010年海地地震)或战争(如2016年也门持续的内战)的地区观察到霍乱疫情,这些地区的医疗保健和卫生设施因此遭到破坏。全细胞口服霍乱疫苗(OCV)已投放市场,但其方案疗效受到质疑。反向疫苗学(RV)方法已被用作许多传染病的成功抗菌措施。

方法

为了寻找用于疫苗开发的新的保护性抗原,采用顺序优先排序方法对霍乱弧菌O1(生物变种埃尔托型,菌株N16961)的蛋白质组进行了计算机筛选,重点是确定潜在疫苗候选物的抗原性。选择必需、可及、有毒力和免疫原性的蛋白质作为潜在候选物。对预测的表位进行筛选,以实现与主要组织相容性复合体(MHC)等位基因的有效结合,并选择与更多MHC等位基因结合的表位。

结果

在本研究中,我们报告脂蛋白、外膜蛋白、辅助定植因子、孔蛋白、假定蛋白和外膜蛋白作为符合所有设定标准的潜在候选物。这些预测的表位可为开发可靠的霍乱弧菌肽疫苗或亚单位疫苗提供潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1281/6589079/abc7553ebe5a/peerj-07-6223-g001.jpg

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