Department of Neurosurgery, People's Hospital of Zhangjiajie, Zhangjiajie, Hunan 427000, P.R. China.
Mol Med Rep. 2019 Aug;20(2):1873-1882. doi: 10.3892/mmr.2019.10428. Epub 2019 Jun 26.
Glioblastoma multiforme (GBM) is the most common malignant tumor with high morbidity and mortality. This study investigated the role of long non‑coding RNAs (lncRNAs) in glioblastomagenesis progression. Using the GSE2223 and GSE59612 datasets, and RNA sequencing data of GBM from The Cancer Genome Atlas, differentially expressed (DE) genes including DE messenger RNAs (DEmRNAs) and DElncRNAs between GBM and normal controls were identified. Based on the competing endogenous RNA hypothesis, DElncRNA‑micro RNA (miRNA)‑DEmRNA interactions were obtained by target gene prediction. Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genomes pathway analysis of DEmRNAs in the DElncRNA‑miRNA‑DEmRNA network was performed. Expression and function analyses of DElncRNAs were performed by reverse transcription‑polymerase chain reaction (RT‑PCR) and an established viability assay, respectively. In total, 712 DE genes were identified. Significant upregulation of lncRNA deleted in lymphocytic leukemia 1 (DLEU1) was revealed in GBM and a number of other types of cancer. DLEU1 interacted with 315 miRNAs and 105 DEmRNAs. The DEmRNAs were mainly enriched in tumorigenesis‑associated GO terms (angiogenesis, positive regulation of cell proliferation, positive regulation of fibroblast apoptotic processes and regulation of neutrophil migration) and pathways (Hippo signaling pathway, cancer pathways, and Wnt signaling pathway). Correlation analysis revealed that mRNA TNF receptor associated factor 4 (TRAF4) was associated with DLEU1 expression. RT‑PCR demonstrated that the expression levels of DLEU1 and TRAF4 were increased in GBM tissues. Small interfering RNA demonstrated that silencing DLEU1 downregulated TRAF4. The viability of GBM cells was significantly decreased following RNA interference with DLEU1 and TRAF4 production. The results demonstrate that DLEU1 and TRAF4 is highly expressed in GBM tissues and promotes proliferation of GBM cells. It may act as a competing endogenous RNA and influence tumorigenesis of GBM.
多形性胶质母细胞瘤(GBM)是发病率和死亡率最高的最常见恶性肿瘤。本研究探讨了长非编码 RNA(lncRNA)在胶质母细胞瘤发生发展中的作用。使用 GSE2223 和 GSE59612 数据集以及癌症基因组图谱中的 GBM RNA 测序数据,鉴定了 GBM 与正常对照之间差异表达的(DE)基因,包括 DE 信使 RNA(DEmRNA)和 DE lncRNA。基于竞争内源性 RNA 假说,通过靶基因预测获得了 DElncRNA-miRNA-DEmRNA 相互作用。对 DElncRNA-miRNA-DEmRNA 网络中的 DEmRNA 进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析。通过逆转录-聚合酶链反应(RT-PCR)和建立的生存能力测定分别对 DElncRNA 的表达和功能进行分析。共鉴定出 712 个 DE 基因。在 GBM 和其他几种类型的癌症中,lncRNA 缺失性淋巴细胞白血病 1(DLEU1)明显上调。DLEU1 与 315 个 miRNA 和 105 个 DEmRNA 相互作用。DEmRNAs 主要富集在与肿瘤发生相关的 GO 术语(血管生成、细胞增殖的正调控、成纤维细胞凋亡过程的正调控和中性粒细胞迁移的调节)和途径(Hippo 信号通路、癌症途径和 Wnt 信号通路)中。相关性分析显示,mRNA 肿瘤坏死因子受体相关因子 4(TRAF4)与 DLEU1 表达相关。RT-PCR 显示,DLEU1 和 TRAF4 的表达水平在 GBM 组织中增加。小干扰 RNA 显示,沉默 DLEU1 下调 TRAF4。用 DLEU1 和 TRAF4 产生的 RNA 干扰后,GBM 细胞的活力显著降低。结果表明,DLEU1 和 TRAF4 在 GBM 组织中高表达,并促进 GBM 细胞的增殖。它可能作为一种竞争内源性 RNA,影响 GBM 的肿瘤发生。