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结合随机微孔基质筛选和“魔术三角形”策略,高效解析噬菌体 P68 潜在溶菌酶的结构。

Combining random microseed matrix screening and the magic triangle for the efficient structure solution of a potential lysin from bacteriophage P68.

机构信息

School of Biological Sciences, The University of Adelaide, North Terrace, Adelaide, South Australia 5005, Australia.

MX, Australian Synchrotron, 800 Blackburn Road Clayton, Melbourne, VIC 3168, Australia.

出版信息

Acta Crystallogr D Struct Biol. 2019 Jul 1;75(Pt 7):670-681. doi: 10.1107/S2059798319009008. Epub 2019 Jul 2.

Abstract

Two commonly encountered bottlenecks in the structure determination of a protein by X-ray crystallography are screening for conditions that give high-quality crystals and, in the case of novel structures, finding derivatization conditions for experimental phasing. In this study, the phasing molecule 5-amino-2,4,6-triiodoisophthalic acid (I3C) was added to a random microseed matrix screen to generate high-quality crystals derivatized with I3C in a single optimization experiment. I3C, often referred to as the magic triangle, contains an aromatic ring scaffold with three bound I atoms. This approach was applied to efficiently phase the structures of hen egg-white lysozyme and the N-terminal domain of the Orf11 protein from Staphylococcus phage P68 (Orf11 NTD) using SAD phasing. The structure of Orf11 NTD suggests that it may play a role as a virion-associated lysin or endolysin.

摘要

在利用 X 射线晶体学确定蛋白质结构的过程中,通常会遇到两个常见的瓶颈:筛选出能够获得高质量晶体的条件,以及在遇到新颖结构时,找到用于实验相位测定的衍生化条件。在这项研究中,将相位测定分子 5-氨基-2,4,6-三碘间苯二甲酸(I3C)添加到随机微种基质筛选中,以在单个优化实验中生成用 I3C 衍生化的高质量晶体。I3C 通常被称为“魔术三角”,它含有一个带有三个结合碘原子的芳香环支架。这种方法被应用于使用 SAD 相位测定法有效地对鸡卵清溶菌酶和葡萄球菌噬菌体 P68 的 N 端结构域(Orf11 NTD)的结构进行相位测定。Orf11 NTD 的结构表明,它可能作为病毒体相关溶菌酶或内溶素发挥作用。

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