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利用“魔术三角”进行内部高能量远程 SAD 相位测定:如何利用相同的人源 IBA57 晶体的多个取向来增加多重性,解决 P1 低对称性问题。

In-house high-energy-remote SAD phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations of the same crystal of human IBA57 to increase the multiplicity.

机构信息

CERM - Magnetic Resonance Center, University of Florence, Via Luigi Sacconi 6, 50019 Sesto Fiorentino (FI), Italy.

出版信息

Acta Crystallogr D Struct Biol. 2019 Mar 1;75(Pt 3):317-324. doi: 10.1107/S2059798319000214. Epub 2019 Feb 28.

DOI:10.1107/S2059798319000214
PMID:30950402
Abstract

This article describes the approach used to solve the structure of human IBA57 in-house by 5-amino-2,4,6-triiodoisophthalic acid (I3C) high-energy-remote single-wavelength anomalous dispersion (SAD) phasing. Multiple orientations of the same triclinic crystal were exploited to acquire sufficient real data multiplicity for phasing. How the collection of an in-house native data set and its joint use with the I3C derivative through a SIRAS approach decreases the data multiplicity needed by almost 50% is described. Furthermore, it is illustrated that there is a clear data-multiplicity threshold value for success and failure in phasing, and how adding further data does not significantly affect substructure solution and model building. To our knowledge, this is the only structure present in the PDB that has been solved in-house by remote SAD phasing in space group P1 using only one crystal. All of the raw data used, derived from the different orientations, have been uploaded to Zenodo in order to enable software developers to improve methods for data processing and structure solution, and for educational purposes.

摘要

本文介绍了使用 5-氨基-2,4,6-三碘间苯二甲酸(I3C)高能远程单波长反常散射(SAD)相位测定法解决人源 IBA57 结构的方法。利用同一块三斜晶体的多个取向来获取足够的真实数据多重性以进行相位测定。本文描述了如何通过 SIRAS 方法收集内部天然数据集并与 I3C 衍生物联合使用,从而将所需的数据多重性降低近 50%。此外,本文还说明了在相位测定中存在明显的数据多重性成功和失败的阈值,以及增加更多数据如何不会显著影响亚结构解决和模型构建。据我们所知,这是唯一一个使用仅一个晶体在 P1 空间群中通过远程 SAD 相位测定法在 PDB 中解决的结构。所有使用的原始数据,都来自不同的取向,已上传到 Zenodo,以便软件开发人员能够改进数据处理和结构解决方案的方法,并用于教育目的。

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