• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

可转移多极原子的电子密度数据库的极化

Polarization of Electron Density Databases of Transferable Multipolar Atoms.

作者信息

Leduc Théo, Aubert Emmanuel, Espinosa Enrique, Jelsch Christian, Iordache Cristian, Guillot Benoît

机构信息

Université de Lorraine, CNRS, CRM2 , F-54000 Nancy , France.

出版信息

J Phys Chem A. 2019 Aug 15;123(32):7156-7170. doi: 10.1021/acs.jpca.9b05051. Epub 2019 Aug 4.

DOI:10.1021/acs.jpca.9b05051
PMID:31294565
Abstract

Polarizability is a key molecular property involved in either macroscopic (i.e., dielectric constant) and microscopic properties (i.e., interaction energies). In rigid molecules, this property only depends on the ability of the electron density (ED) to acquire electrostatic moments in response to applied electric fields. Databases of transferable electron density fragments are a cheap and efficient way to access molecular EDs. This approach is rooted in the relative conservation of the atomic ED between different molecules, termed transferability principle. The present work discusses the application of this transferability principle to the polarizability, an electron density-derived property, partitioned in atomic contributions using the Quantum Theory of Atoms In Molecules topology. The energetic consequences of accounting for in situ deformation (polarization) of database multipolar atoms are investigated in detail by using a high-quality quantum chemical benchmark.

摘要

极化率是一个关键的分子性质,涉及宏观性质(即介电常数)和微观性质(即相互作用能)。在刚性分子中,该性质仅取决于电子密度(ED)响应外加电场而获得静电矩的能力。可转移电子密度片段数据库是获取分子ED的一种廉价且高效的方法。这种方法基于不同分子间原子ED的相对守恒,即所谓的可转移原理。本工作讨论了这种可转移原理在极化率方面的应用,极化率是一种源自电子密度的性质,利用分子中的原子量子理论拓扑将其划分为原子贡献。通过使用高质量的量子化学基准,详细研究了考虑数据库多极原子原位变形(极化)的能量后果。

相似文献

1
Polarization of Electron Density Databases of Transferable Multipolar Atoms.可转移多极原子的电子密度数据库的极化
J Phys Chem A. 2019 Aug 15;123(32):7156-7170. doi: 10.1021/acs.jpca.9b05051. Epub 2019 Aug 4.
2
Transferability of quantum topological atoms in terms of electrostatic interaction energy.基于静电相互作用能的量子拓扑原子的可转移性
J Phys Chem A. 2006 Dec 21;110(50):13578-83. doi: 10.1021/jp0652190.
3
Beyond Point Charges: Dynamic Polarization from Neural Net Predicted Multipole Moments.超越点电荷:来自神经网络预测的多极矩的动态极化。
J Chem Theory Comput. 2008 Sep 9;4(9):1435-48. doi: 10.1021/ct800166r.
4
Experimental and database-transferred electron-density analysis and evaluation of electrostatic forces in coumarin-102 dye.香豆素-102染料中静电作用力的实验及数据库转移电子密度分析与评估
Acta Crystallogr B. 2012 Dec;68(Pt 6):646-60. doi: 10.1107/S0108768112042826. Epub 2012 Nov 16.
5
A theoretical-electron-density databank using a model of real and virtual spherical atoms.一个使用真实和虚拟球形原子模型的理论电子密度数据库。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Aug 1;73(Pt 4):610-625. doi: 10.1107/S2052520617008204. Epub 2017 Jul 27.
6
Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.遗传编码氨基酸的分子内原子研究。III. 键和原子性质及其与实验的相关性,包括突变诱导的蛋白质稳定性变化和遗传编码。
Proteins. 2003 Aug 15;52(3):360-99. doi: 10.1002/prot.10414.
7
Is it possible to derive quantitative information on polarization of electron density from the multipolar model?是否有可能从多极模型中获得关于电子密度极化的定量信息?
Acta Crystallogr A. 2012 Nov;68(Pt 6):705-14. doi: 10.1107/S010876731203317X. Epub 2012 Sep 25.
8
Distributed functional-group polarizabilities in polypeptides and peptide clusters toward accurate prediction of electro-optical properties of biomacromolecules.多肽和肽簇中的分布式官能团极化率,以准确预测生物大分子的电光性质。
J Mol Model. 2023 Jan 20;29(2):49. doi: 10.1007/s00894-023-05451-5.
9
Contributions to the application of the transferability principle and the multipolar modeling of H atoms: electron-density study of L-histidinium dihydrogen orthophosphate orthophosphoric acid. I.
Acta Crystallogr A. 2006 Sep;62(Pt 5):365-78. doi: 10.1107/S0108767306025141. Epub 2006 Aug 23.
10
An improved experimental databank of transferable multipolar atom models--ELMAM2. Construction details and applications.改进的可转移多极原子模型实验数据库——ELMAM2。构建细节与应用
Acta Crystallogr A. 2012 May;68(Pt 3):337-51. doi: 10.1107/S0108767312008197. Epub 2012 Mar 29.

引用本文的文献

1
Unveiling GruPol: Predicting Electric and Electrostatic Properties of Macromolecules via the Building Block Approach.揭示GruPol:通过构建模块法预测大分子的电学和静电性质。
J Phys Chem B. 2024 Aug 22;128(33):7954-7965. doi: 10.1021/acs.jpcb.4c03062. Epub 2024 Jul 8.
2
Biochemical and Structural Characterization of Chi-Class Glutathione Transferases: A Snapshot on the Glutathione Transferase Encoded by Gene in the Cyanobacterium sp. Strain PCC 6803.Chi 类谷胱甘肽转移酶的生化和结构特征:蓝藻 PCC 6803 菌株中基因编码的谷胱甘肽转移酶的快照。
Biomolecules. 2022 Oct 13;12(10):1466. doi: 10.3390/biom12101466.
3
Combining Molecular Dynamic Information and an Aspherical-Atom Data Bank in the Evaluation of the Electrostatic Interaction Energy in Multimeric Protein-Ligand Complex: A Case Study for HIV-1 Protease.
结合分子动力学信息和非球原子数据库评估多聚体蛋白-配体复合物中的静电相互作用能:以 HIV-1 蛋白酶为例。
Molecules. 2021 Jun 24;26(13):3872. doi: 10.3390/molecules26133872.
4
Similarities and Differences between Crystal and Enzyme Environmental Effects on the Electron Density of Drug Molecules.晶体和酶对药物分子电子密度的环境效应的异同。
Chemistry. 2021 Feb 15;27(10):3407-3419. doi: 10.1002/chem.202003978. Epub 2021 Jan 14.