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酮酸还原异构酶的晶体结构和生化特性研究

Crystal Structure and Biochemical Characterization of Ketol-Acid Reductoisomerase from .

机构信息

School of Life Sciences, BK21 Plus KNU Creative BioResearch Group , Kyungpook National University , Daehak-ro 80, Buk-ku , Daegu 702-701 , Korea.

KNU Institute for Microorganisms , Kyungpook National University , Daegu 41566 , Republic of Korea.

出版信息

J Agric Food Chem. 2019 Aug 7;67(31):8527-8535. doi: 10.1021/acs.jafc.9b03262. Epub 2019 Jul 25.

Abstract

l-Valine belongs to the branched-chain amino acids (BCAAs) and is an essential amino acid that is crucial for all living organisms. l-Valine is industrially produced by the nonpathogenic bacterium and is synthesized by the BCAA biosynthetic pathway. Ketol-acid reductoisomerase (KARI) is the second enzyme in the BCAA pathway and catalyzes the conversion of ()-2-acetolactate into ()-2,3-dihydroxy-isovalerate, or the conversion of ()-2-aceto-2-hydroxybutyrate into ()-2,3-dihydroxy-3-methylvalerate. To elucidate the enzymatic properties of KARI from (KARI), we successfully produced KARI protein and determined its crystal structure in complex with NADP and two Mg ions. Based on the complex structure, docking simulations, and site-directed mutagenesis experiments, we revealed that KARI belongs to Class I KARI and identified key residues involved in stabilization of the substrate, metal ions, and cofactor. Furthermore, we confirmed the difference in the binding of metal ions that depended on the conformational change.

摘要

缬氨酸属于支链氨基酸 (BCAA),是所有生物都必需的一种氨基酸。缬氨酸可由非致病性细菌工业生产,通过支链氨基酸生物合成途径合成。酮酸还原异构酶 (KARI) 是支链氨基酸途径中的第二个酶,催化 ()-2-乙酰乳酸转化为 ()-2,3-二羟基异戊酸,或 ()-2-乙酰-2-羟基丁酸转化为 ()-2,3-二羟基-3-甲基戊酸。为阐明 (KARI)的 KARI 酶学性质,我们成功生产了 KARI 蛋白,并测定了其与 NADP 和两个 Mg 离子形成复合物的晶体结构。基于复合物结构、对接模拟和定点突变实验,我们揭示了 KARI 属于 I 类 KARI,并确定了参与稳定底物、金属离子和辅因子的关键残基。此外,我们还证实了依赖于构象变化的金属离子结合的差异。

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