W.M. Keck Center for Transgene Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Department of Biochemistry and Molecular Biology, Monash University, Clayton 3800 VIC, Australia.
J Struct Biol. 2019 Oct 1;208(1):18-29. doi: 10.1016/j.jsb.2019.07.005. Epub 2019 Jul 10.
VEK50 is a truncated peptide from a Streptococcal pyogenes surface human plasminogen (hPg) binding M-protein (PAM). VEK50 contains the full A-domain of PAM, which is responsible for its low nanomolar binding to hPg. The interaction of VEK50 with kringle 2, the PAM-binding domain in hPg (K2), has been studied by high-resolution NMR spectroscopy. The data show that each VEK50 monomer in solution contains two tight binding sites for K2, one each in the a1- (RH1; RH) and a2- (RH2; RH) repeats within the A-domain of VEK50. Two mutant forms of VEK50, viz., VEK50[RH1/AA] (VEK50) and VEK50[RH2/AA] (VEK50), were designed by replacing each RH with AA, thus eliminating one of the K2 binding sites within VEK50, and allowing separate study of each binding site. Using C- and N-labeled peptides, NMR-derived solution structures of VEK50 in its complex with K2 were solved. We conclude that the A-domain of PAM can accommodate two molecules of K2 docked within a short distance of each other, and the strength of the binding is slightly different for each site. The solution structure of the VEK50/K2, complex, which is a reductionist model of the PAM/hPg complex, provides insights for the binding mechanism of PAM to a host protein, a process that is critical to S. pyogenes virulence.
VEK50 是一种从酿脓链球菌表面人纤溶酶原(hPg)结合 M 蛋白(PAM)截断的肽。VEK50 包含 PAM 的完整 A 结构域,该结构域负责其与 hPg 的低纳摩尔结合。通过高分辨率 NMR 光谱研究了 VEK50 与 PAM 结合域(K2)中纤溶酶原kringle 2 的相互作用。数据表明,溶液中的每个 VEK50 单体在 A 结构域中各含有两个紧密结合的 K2 结合位点,一个位于 a1-(RH1;RH)重复序列,另一个位于 a2-(RH2;RH)重复序列内。通过用 AA 取代每个 RH,设计了两种 VEK50 的突变形式,即 VEK50[RH1/AA](VEK50)和 VEK50[RH2/AA](VEK50),从而消除了 VEK50 内的一个 K2 结合位点,并允许分别研究每个结合位点。使用 C 和 N 标记的肽,通过 NMR 解决了 VEK50 与其与 K2 复合物的溶液结构。我们得出的结论是,PAM 的 A 结构域可以容纳两个彼此靠近的 K2 分子,每个位点的结合强度略有不同。VEK50/K2 复合物的溶液结构是 PAM/hPg 复合物的简化模型,为 PAM 与宿主蛋白结合的机制提供了见解,这是酿脓链球菌毒力的关键过程。