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H2k2 是 ceRNA 网络中的拓扑关键长非编码 RNA,可促进糖尿病肾病系膜细胞增殖 miR-449a/b/Trim11/Mek 信号通路。

The topological key lncRNA H2k2 from the ceRNA network promotes mesangial cell proliferation in diabetic nephropathy the miR-449a/b/Trim11/Mek signaling pathway.

机构信息

Molecular Medicine and Cancer Research Center, Chongqing Medical University, Chongqing, China.

Department of Bioinformatics, Chongqing Medical University, Chongqing, China.

出版信息

FASEB J. 2019 Oct;33(10):11492-11506. doi: 10.1096/fj.201900522R. Epub 2019 Jul 23.

Abstract

Evidence has shown that long noncoding RNAs (lncRNAs) in the competing endogenous RNA (ceRNA) network are involved in various diseases. However, there is a lack of studies of the ceRNA network in diabetic nephropathy (DN). In this study, we investigated the effect of lncRNAs on mesangial cell (MC) proliferation in DN-related ceRNA networks. Differences in lncRNA and mRNA expression between DN and normal mouse kidney tissues were detected with RNA-seq, and DN-related lncRNA/mRNA/microRNA (miRNA) ceRNA networks were constructed by R3.4.3. Computational analysis was performed, and expression and interactions between the topological RNAs were detected by bioinformatics methods, real-time quantitative PCR (qPCR), and luciferase assay. Cell proliferation ability was measured by 5-ethynyl-2-deoxyuridine (EdU) in MCs cultured under high- or low-glucose conditions. Moreover, the effect of the topological key lncRNA histocompatibility 2 K region locus 2 (H2k2) H2k2 on MC proliferation the miRNA (miR)-449a/b/triplet motif 11 (Trim11)/Mek signaling pathway was examined by EdU, flow cytometry analysis, and Western blot. In total, 153 lncRNAs, 428 mRNAs, and 2242 interactions were included in the constructed DN-related ceRNA network. There were 15 RNAs in the top 5% of degree and betweenness. The expression of lncRNA H2k2 and mRNA Trim11 in MCs was increased in DN, which is consistent with the results of RNA-seq and real-time qPCR and miR-449a and miR-449b, which were down-regulated in MCs cultured with high glucose, were selected for further analysis. The results of real-time qPCR and luciferase assay revealed the lncRNA H2k2-miR-449a/b-Trim11 interaction in MCs. In addition, the data showed that H2k2 regulates MC proliferation the miR-449ab/Trim11/Mek signaling pathway. Taken together, these results provide new insight into the association between the topological key lncRNA H2k2 in the DN-related ceRNA network and the miR-449a/b/Trim11/Mek signaling pathway during MC proliferation in DN.-Chen, W., Peng, R., Sun, Y., Liu, H., Zhang, L., Peng, H., Zhang, Z. The topological key lncRNA H2k2 from the ceRNA network promotes mesangial cell proliferation in diabetic nephropathy the miR-449a/b/Trim11/Mek signaling pathway.

摘要

证据表明,竞争性内源 RNA (ceRNA) 网络中的长非编码 RNA (lncRNA) 参与了各种疾病。然而,关于糖尿病肾病 (DN) 中 ceRNA 网络的研究还很少。在这项研究中,我们研究了 lncRNA 在与 DN 相关的 ceRNA 网络中对系膜细胞 (MC) 增殖的影响。通过 RNA-seq 检测 DN 和正常小鼠肾组织之间的 lncRNA 和 mRNA 表达差异,并通过 R3.4.3 构建 DN 相关 lncRNA/mRNA/miRNA (miRNA) ceRNA 网络。通过生物信息学方法、实时定量 PCR(qPCR) 和荧光素酶测定检测计算分析和拓扑 RNA 之间的表达和相互作用。在高糖或低糖条件下培养 MC 时,通过 5-乙炔基-2-脱氧尿苷 (EdU) 测量细胞增殖能力。此外,通过 EdU、流式细胞术分析和 Western blot 检测拓扑关键 lncRNA 组织相容性 2 K 区基因座 2 (H2k2) 对 MC 增殖的影响miR-449a/b/Trim11 信号通路。总共包括 153 个 lncRNA、428 个 mRNA 和 2242 个相互作用在构建的与 DN 相关的 ceRNA 网络中。在度和介数排名前 5%的有 15 个 RNA。在 DN 中,lncRNA H2k2 和 mRNA Trim11 的表达增加,这与 RNA-seq 和实时 qPCR 的结果一致,并且在高糖培养的 MC 中下调的 miR-449a 和 miR-449b 被选择用于进一步分析。实时 qPCR 和荧光素酶测定的结果揭示了 MC 中 lncRNA H2k2-miR-449a/b-Trim11 相互作用。此外,数据表明 H2k2 通过 miR-449ab/Trim11/Mek 信号通路调节 MC 增殖。总之,这些结果为与 DN 相关的 ceRNA 网络中的拓扑关键 lncRNA H2k2 与 miR-449a/b/Trim11/Mek 信号通路在 DN 期间 MC 增殖之间的关联提供了新的见解。

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