Kandiyal Pancham S, Kim Ji Yoon, Fortunati Daniel L, Mok K H
Trinity Biomedical Sciences Institute (TBSI), School of Biochemistry & Immunology, Trinity College Dublin, Dublin, Ireland.
Methods Mol Biol. 2019;2039:173-183. doi: 10.1007/978-1-4939-9678-0_13.
Diffusion-ordered spectroscopy (DOSY) is a widely used NMR technique for the identification of different chemical moieties/compounds contained in mixtures and has been successfully employed for the separation of small molecules based on hydrodynamic radii. Herein we show that DOSY can also be applied for the size determination of larger biomolecules such as proteins and protein oligomers/aggregates. Proof-of-principle is first shown with a cross-linked oligomeric protein mixture where the hydrodynamic volumes of each component are estimated and subsequently verified with size-exclusion HPLC and SDS polyacrylamide gel electrophoresis. We then determine the sizes of protein oligomers contained in a protein solution subjected under amyloid fibrillogenesis conditions. These studies aim to provide insight into the kinetics behind protein aggregation involved in amyloidosis as well as to determine the hydrodynamic radii of proteins within the mixture.
扩散排序光谱法(DOSY)是一种广泛应用的核磁共振技术,用于鉴定混合物中所含的不同化学基团/化合物,并已成功用于基于流体力学半径分离小分子。在此我们表明,DOSY还可用于测定较大生物分子如蛋白质和蛋白质寡聚体/聚集体的大小。首先在交联寡聚蛋白质混合物中展示了原理验证,其中估计了每种组分的流体力学体积,随后通过尺寸排阻高效液相色谱法和十二烷基硫酸钠聚丙烯酰胺凝胶电泳进行了验证。然后我们测定了处于淀粉样纤维形成条件下的蛋白质溶液中所含蛋白质寡聚体的大小。这些研究旨在深入了解淀粉样变性中蛋白质聚集背后的动力学,以及确定混合物中蛋白质的流体力学半径。