Becker Doreen, Niggel Jessica K, Pearce-Kelling Sue, Riis Ronald C, Aguirre Gustavo D
Leibniz Institute for Farm Animal Biology (FBN), Institute for Genome Biology, Dummerstorf, Germany.
Section of Ophthalmology, Department of Clinical Sciences & Advanced Medicine, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA.
Vet Ophthalmol. 2020 Jan;23(1):67-76. doi: 10.1111/vop.12691. Epub 2019 Jul 25.
To conduct a genetic and candidate gene association study with samples from phenotype-ascertained dogs to identify putative disease-associated gene/mutation for optic nerve hypoplasia (ONH) in the miniature poodle.
A total of 43 miniature poodles from the United States and Europe, nine affected bilaterally with ONH, were included in the study. Pedigree information was recorded.
A pedigree including all animals studied was assembled. Twenty-one genes typically expressed in ganglion cells or that are associated with ocular malformations and have a critical function in eye and neural retina development were selected. Exons and exon-intron boundaries of eight genes were sequenced in four ONH cases and four controls. Furthermore, cases and controls were genotyped with the Illumina CanineHD BeadChip to obtain genotypes for 13 additional candidate genes for haplotype association.
The assembled pedigree connected all ONH-affected dogs to a possible common founder. Identified variants and haplotypes of the tested candidate genes did not segregate with the phenotype using Identity by Descent approach assuming autosomal recessive inheritance with variable but yet unknown penetrance.
Pedigree analysis did not reveal the inheritance pattern. There is no evidence of association of the evaluated candidate genes with ONH; therefore, the screened candidate genes can provisionally be ruled out as causally associated with the disease.
对经表型确定的犬类样本进行基因和候选基因关联研究,以鉴定玩具贵宾犬视神经发育不全(ONH)的假定疾病相关基因/突变。
共有来自美国和欧洲的43只玩具贵宾犬纳入研究,其中9只双侧患有ONH。记录了系谱信息。
构建了包括所有研究动物的系谱。选择了21个通常在神经节细胞中表达、与眼部畸形相关且在眼睛和神经视网膜发育中起关键作用的基因。对4例ONH病例和4例对照的8个基因的外显子和外显子-内含子边界进行了测序。此外,使用Illumina CanineHD BeadChip对病例和对照进行基因分型,以获得另外13个候选基因的单倍型关联基因型。
构建的系谱将所有受ONH影响的犬与一个可能的共同祖先联系起来。假设常染色体隐性遗传且具有可变但未知的外显率,使用基于血缘关系的方法,所测试候选基因的已鉴定变异和单倍型与表型不分离。
系谱分析未揭示遗传模式。没有证据表明所评估的候选基因与ONH有关联;因此,初步可以排除所筛选的候选基因与该疾病存在因果关联。