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蛋白质翻译后乙酰化:细菌动态调节代谢功能的精妙机制。

Post-translational Protein Acetylation: An Elegant Mechanism for Bacteria to Dynamically Regulate Metabolic Functions.

作者信息

Christensen David G, Xie Xueshu, Basisty Nathan, Byrnes James, McSweeney Sean, Schilling Birgit, Wolfe Alan J

机构信息

Health Sciences Division, Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, United States.

Buck Institute for Research on Aging, Novato, CA, United States.

出版信息

Front Microbiol. 2019 Jul 12;10:1604. doi: 10.3389/fmicb.2019.01604. eCollection 2019.

Abstract

Post-translational modifications (PTM) decorate proteins to provide functional heterogeneity to an existing proteome. The large number of known PTMs highlights the many ways that cells can modify their proteins to respond to diverse stimuli. Recently, PTMs have begun to receive increased interest because new sensitive proteomics workflows and structural methodologies now allow researchers to obtain large-scale, in-depth and unbiased information concerning PTM type and site localization. However, few PTMs have been extensively assessed for functional consequences, leaving a large knowledge gap concerning the inner workings of the cell. Here, we review understanding of -𝜀-lysine acetylation in bacteria, a PTM that was largely ignored in bacteria until a decade ago. Acetylation is a modification that can dramatically change the function of a protein through alteration of its properties, including hydrophobicity, solubility, and surface properties, all of which may influence protein conformation and interactions with substrates, cofactors and other macromolecules. Most bacteria carry genes predicted to encode the lysine acetyltransferases and lysine deacetylases that add and remove acetylations, respectively. Many bacteria also exhibit acetylation activities that do not depend on an enzyme, but instead on direct transfer of acetyl groups from the central metabolites acetyl coenzyme A or acetyl phosphate. Regardless of mechanism, most central metabolic enzymes possess lysines that are acetylated in a regulated fashion and many of these regulated sites are conserved across the spectrum of bacterial phylogeny. The interconnectedness of acetylation and central metabolism suggests that acetylation may be a response to nutrient availability or the energy status of the cell. However, this and other hypotheses related to acetylation remain untested.

摘要

翻译后修饰(PTM)修饰蛋白质,为现有的蛋白质组提供功能异质性。大量已知的翻译后修饰突出了细胞修饰其蛋白质以应对各种刺激的多种方式。最近,翻译后修饰开始受到越来越多的关注,因为新的灵敏蛋白质组学工作流程和结构方法现在使研究人员能够获得有关翻译后修饰类型和位点定位的大规模、深入且无偏差的信息。然而,很少有翻译后修饰被广泛评估其功能后果,这使得关于细胞内部运作的知识存在很大空白。在这里,我们综述了对细菌中ε-赖氨酸乙酰化的理解,这种翻译后修饰在十年前之前在细菌中基本上被忽视。乙酰化是一种修饰,它可以通过改变蛋白质的性质,包括疏水性、溶解性和表面性质,从而显著改变蛋白质的功能,所有这些性质都可能影响蛋白质的构象以及与底物、辅因子和其他大分子的相互作用。大多数细菌携带预测可分别编码添加和去除乙酰化修饰的赖氨酸乙酰转移酶和赖氨酸脱乙酰酶的基因。许多细菌还表现出不依赖于酶的乙酰化活性,而是依赖于乙酰基团从中心代谢物乙酰辅酶A或乙酰磷酸的直接转移。无论机制如何,大多数中心代谢酶都拥有以受调控方式被乙酰化的赖氨酸,并且这些受调控位点中的许多在整个细菌系统发育谱系中都是保守的。乙酰化与中心代谢的相互联系表明,乙酰化可能是对营养物质可用性或细胞能量状态的一种反应。然而,这一假设以及其他与乙酰化相关的假设仍未得到验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9431/6640162/ccf00a81748e/fmicb-10-01604-g001.jpg

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