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随机休眠退出导致细菌种群中后代的长尾分布。

Stochastic exits from dormancy give rise to heavy-tailed distributions of descendants in bacterial populations.

机构信息

Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.

Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.

出版信息

Mol Ecol. 2019 Sep;28(17):3915-3928. doi: 10.1111/mec.15200. Epub 2019 Aug 21.

Abstract

Variance in reproductive success is a major determinant of the degree of genetic drift in a population. While many plants and animals exhibit high variance in their number of progeny, far less is known about these distributions for microorganisms. Here, we used a strain barcoding approach to quantify variability in offspring number among replicate bacterial populations and developed a Bayesian method to infer the distribution of descendants from this variability. We applied our approach to measure the offspring distributions for five strains of bacteria from the genus Streptomyces after germination and growth in a homogenous laboratory environment. The distributions of descendants were heavy-tailed, with a few cells effectively 'winning the jackpot' to become a disproportionately large fraction of the population. This extreme variability in reproductive success largely traced back to initial populations of spores stochastically exiting dormancy, which provided early-germinating spores with an exponential advantage. In simulations with multiple dormancy cycles, heavy-tailed distributions of descendants decreased the effective population size by many orders of magnitude and led to allele dynamics differing substantially from classical population genetics models with matching effective population size. Collectively, these results demonstrate that extreme variability in reproductive success can occur even in growth conditions that are far more homogeneous than the natural environment. Thus, extreme variability in reproductive success might be an important factor shaping microbial population dynamics with implications for predicting the fate of beneficial mutations, interpreting sequence variability within populations and explaining variability in infection outcomes across patients.

摘要

繁殖成功的差异是种群遗传漂变程度的主要决定因素。虽然许多植物和动物的后代数量差异很大,但对于微生物的这些分布情况知之甚少。在这里,我们使用菌株条码方法来量化复制细菌种群中后代数量的可变性,并开发了一种贝叶斯方法来从这种可变性推断后代的分布。我们应用这种方法来测量在同质实验室环境中发芽和生长后来自链霉菌属的五个细菌菌株的后代分布。后代的分布呈重尾分布,少数细胞有效地“赢得了大奖”,成为种群中不成比例的大比例。这种繁殖成功的极端可变性在很大程度上可以追溯到休眠状态的孢子初始种群的随机退出,这为早期发芽的孢子提供了指数优势。在具有多个休眠周期的模拟中,后代的重尾分布使有效种群数量减少了许多数量级,并导致等位基因动态与具有匹配有效种群数量的经典种群遗传学模型有很大不同。总的来说,这些结果表明,即使在比自然环境更为同质的生长条件下,繁殖成功的极端可变性也可能是塑造微生物种群动态的重要因素,这对预测有益突变的命运、解释种群内序列变异性以及解释患者间感染结果的变异性具有重要意义。

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