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Dupuytren 病的患病率存在种族差异,部分原因是已知的遗传风险变异。

Ethnic differences in prevalence of Dupuytren disease can partly be explained by known genetic risk variants.

机构信息

Department of Plastic Surgery, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.

Department of Epidemiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.

出版信息

Eur J Hum Genet. 2019 Dec;27(12):1876-1884. doi: 10.1038/s41431-019-0483-5. Epub 2019 Jul 30.

Abstract

Dupuytren disease (DD), a fibroproliferative disorder of the palmar fascia that causes flexion contractures in the fingers, is prevalent in people of North-Western European descent and less so in other ethnicities. DD is a complex disorder, influenced by genetic risk variants. We aimed to study if the marked differences in prevalences in DD between ethnic (sub)groups could be explained by differences in allele frequencies of the 26 known genetic risk variants of DD. Therefore, genetic risk scores (GRS) composed of the 26 DD risk variants were calculated for the 26 populations from the 1000 Genomes database and correlated to observed DD prevalences from literature. For comparison, GRSs were generated for 10,000 sets of 26 random SNPs and also correlated to the observed DD prevalences to determine the significance of the observed correlation. To determine whether differences in allele frequencies between ethnicities were caused by natural selection, fixation indices (Fst) were calculated from the 26 SNPs and from the sets of 26 random SNPs for comparison. Observed prevalences could be determined from literature for 10 populations. Their correlation with the GRS composed of DD SNPs proved to be 0.60 (p = 0.0003). The Fsts between British and other populations were low for European, ad mixed American, and South-Asian populations, and moderate for East-Asians. African populations were significantly different from expected values determined from the random sets. In conclusion, the 26 known genetic risk variants associated with DD explain for a substantial part (R = 0.36) the differing DD prevalences observed between ethnicities.

摘要

掌腱膜挛缩症(Dupuytren disease,DD)是一种手掌筋膜的纤维增生性疾病,可导致手指弯曲挛缩,在北欧裔人群中较为常见,而在其他种族中则较少见。DD 是一种复杂的疾病,受遗传风险变异的影响。我们旨在研究种族(亚)群体之间 DD 患病率的显著差异是否可以通过 DD 的 26 个已知遗传风险变异的等位基因频率差异来解释。因此,根据 1000 基因组数据库中的 26 个种群计算了由 26 个 DD 风险变异组成的遗传风险评分(genetic risk score,GRS),并将其与文献中观察到的 DD 患病率相关联。为了进行比较,还为 10000 组 26 个随机单核苷酸多态性(single nucleotide polymorphisms,SNP)生成了 GRS,并将其与观察到的 DD 患病率相关联,以确定观察到的相关性的显著性。为了确定种族之间等位基因频率的差异是否是由自然选择引起的,我们从 26 个 SNP 和 26 个随机 SNP 组计算了固定指数(fixation index,Fst)进行比较。对于 10 个种群,可以从文献中确定其患病率。它们与由 DD SNP 组成的 GRS 的相关性为 0.60(p=0.0003)。英国与其他人群之间的 Fst 对于欧洲、混合美洲和南亚人群来说较低,而对于东亚人群来说则适中。非洲人群与从随机组确定的预期值显著不同。总之,与 DD 相关的 26 个已知遗传风险变异可以解释很大一部分(R=0.36)观察到的种族之间 DD 患病率的差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3329/6871523/8c1dd404e104/41431_2019_483_Fig1_HTML.jpg

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