Cambridge Baker Systems Genomics Initiative, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, VIC 3004, Australia.
Hum Mol Genet. 2019 Nov 21;28(R2):R133-R142. doi: 10.1093/hmg/ddz187.
Prediction of disease risk is an essential part of preventative medicine, often guiding clinical management. Risk prediction typically includes risk factors such as age, sex, family history of disease and lifestyle (e.g. smoking status); however, in recent years, there has been increasing interest to include genomic information into risk models. Polygenic risk scores (PRS) aggregate the effects of many genetic variants across the human genome into a single score and have recently been shown to have predictive value for multiple common diseases. In this review, we summarize the potential use cases for seven common diseases (breast cancer, prostate cancer, coronary artery disease, obesity, type 1 diabetes, type 2 diabetes and Alzheimer's disease) where PRS has or could have clinical utility. PRS analysis for these diseases frequently revolved around (i) risk prediction performance of a PRS alone and in combination with other non-genetic risk factors, (ii) estimation of lifetime risk trajectories, (iii) the independent information of PRS and family history of disease or monogenic mutations and (iv) estimation of the value of adding a PRS to specific clinical risk prediction scenarios. We summarize open questions regarding PRS usability, ancestry bias and transferability, emphasizing the need for the next wave of studies to focus on the implementation and health-economic value of PRS testing. In conclusion, it is becoming clear that PRS have value in disease risk prediction and there are multiple areas where this may have clinical utility.
疾病风险预测是预防医学的重要组成部分,通常指导临床管理。风险预测通常包括年龄、性别、疾病家族史和生活方式(如吸烟状况)等风险因素;然而,近年来,人们越来越有兴趣将基因组信息纳入风险模型。多基因风险评分(PRS)将人类基因组中许多遗传变异的影响聚合到一个单一的评分中,最近已被证明对多种常见疾病具有预测价值。在这篇综述中,我们总结了 PRS 在七种常见疾病(乳腺癌、前列腺癌、冠状动脉疾病、肥胖症、1 型糖尿病、2 型糖尿病和阿尔茨海默病)中的潜在应用案例,PRS 在这些疾病中具有或可能具有临床效用。这些疾病的 PRS 分析通常围绕以下几个方面展开:(i)PRS 单独和与其他非遗传风险因素结合的风险预测性能,(ii)终生风险轨迹的估计,(iii)PRS 与疾病家族史或单基因突变的独立信息,以及(iv)评估在特定临床风险预测场景中添加 PRS 的价值。我们总结了关于 PRS 可用性、祖先偏见和可转移性的开放性问题,强调下一波研究需要关注 PRS 检测的实施和健康经济效益。总之,PRS 在疾病风险预测中具有价值,并且在多个领域具有临床应用潜力。