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韩国检测到的人诺如病毒 GII.17 的完整序列分析。

Complete sequence analysis of human norovirus GII.17 detected in South Korea.

机构信息

Department of Microbiology,College of Medicine, The Catholic University of Korea,Seoul,Republic of Korea.

Laboratory of Wildlife Diseases, College of Veterinary Medicine, Chonbuk National University,Iksan,Korea.

出版信息

Epidemiol Infect. 2019 Jan;147:e203. doi: 10.1017/S0950268819000943.

Abstract

Norovirus, a major cause of gastroenteritis in people of all ages worldwide, was first reported in South Korea in 1999. The most common causal agents of pediatric acute gastroenteritis are norovirus and rotavirus. While vaccination has reduced the pediatric rotavirus infection rate, norovirus vaccines have not been developed. Therefore, prediction and prevention of norovirus are very important. Norovirus is divided into genogroups GI-GVII, with GII.4 being the most prevalent. However, in 2012-2013, GII.17 showed a higher incidence than GII.4 and a novel variant, GII.P17-GII.17, appeared. In this study, 204 stool samples collected in 2013-2014 were screened by reverse transcriptase-polymerase chain reaction; 11 GI (5.39%) and 45 GII (22.06%) noroviruses were identified. GI.4, GI.5, GII.4, GII.6 and GII.17 were detected. The whole genomes of the three norovirus GII.17 were sequenced. The whole genome of GII.17 consists of three open reading frames of 5109, 1623 and 780 bp. Compared with 20 GII.17 strains isolated in other countries, we observed numerous changes in the protruding P2 domain of VP1 in the Korean GII.17 viruses. Our study provided genome information that might aid in epidemic prevention, epidemiology studies and vaccine development.

摘要

诺如病毒是一种能引起全球各年龄段人群患肠胃炎的主要病原体,于 1999 年在韩国首次被报道。引起小儿急性肠胃炎的最常见病原体是诺如病毒和轮状病毒。虽然疫苗接种已经降低了小儿轮状病毒的感染率,但尚未开发出诺如病毒疫苗。因此,对诺如病毒的预测和预防非常重要。诺如病毒分为 GI-GVII 基因型,其中 GII.4 是最常见的基因型。然而,在 2012-2013 年,GII.17 的发病率高于 GII.4,并且出现了一种新型变异株,GII.P17-GII.17。在本研究中,通过逆转录-聚合酶链反应对 2013-2014 年采集的 204 份粪便样本进行了筛查,鉴定出 11 株 GI(5.39%)和 45 株 GII(22.06%)诺如病毒。检测到 GI.4、GI.5、GII.4、GII.6 和 GII.17。对三种诺如病毒 GII.17 的全基因组进行了测序。GII.17 的全基因组由 5109、1623 和 780 bp 的三个开放阅读框组成。与在其他国家分离的 20 株 GII.17 株相比,我们观察到韩国 GII.17 病毒 VP1 突出 P2 结构域发生了许多变化。我们的研究提供了基因组信息,可能有助于流行预防、流行病学研究和疫苗开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/17b5/6624861/f1d0bc1a6424/S0950268819000943_fig1.jpg

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