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2013年韩国人诺如病毒的分子流行病学

Molecular Epidemiology of Human Norovirus in Korea in 2013.

作者信息

Kim Jae-Seok, Kim Hyun Soo, Hyun Jungwon, Kim Han-Sung, Song Wonkeun

机构信息

Department of Laboratory Medicine, Hallym University College of Medicine, 7 Keunjaebong-gil, Hwaseong-si, Gyeonggi-do 445-170, Republic of Korea.

出版信息

Biomed Res Int. 2015;2015:468304. doi: 10.1155/2015/468304. Epub 2015 Sep 2.

Abstract

Norovirus is a major cause of acute gastroenteritis. The molecular epidemiology of norovirus exhibits temporal and geographical fluctuations, and new variants of the GII.4 genotype emerge every 2-3 years to cause global epidemics of acute gastroenteritis. We investigated GI and GII genotypes of human norovirus strains isolated from patients with acute gastroenteritis in Korea in 2013. Norovirus antigen test was performed on 2,980 fecal specimens from January to December 2013. RNA was extracted from norovirus antigen-positive fecal suspensions, and the norovirus capsid (VP1) and polymerase (RdRp) genes were characterized by RT-PCR and sequencing. Of the 230 genotyped strains, GII.4 (77.3%) was the most frequently observed capsid genotype, followed by GII.3 (6.1%) and GII.13 (3.9%). A norovirus GII.4 variant, GII.Pe/GII.4 Sydney 2012, was the most frequently found polymerase/capsid genotype (65.7%), followed by GII.P17/GII.17 (2.1%) and GII.P21/GII.3 (2.1%). Phylogenetic, similarity, and capsid epitope analyses of GII.Pe/GII.4 Sydney 2012 strains were performed. We concluded that the norovirus GII.4 variant, GII.Pe/GII.4 Sydney 2012, was the main cause of norovirus-related gastroenteritis in Korea in 2013.

摘要

诺如病毒是急性胃肠炎的主要病因。诺如病毒的分子流行病学呈现出时间和地域上的波动,GII.4基因型的新变种每2至3年出现一次,引发全球急性胃肠炎的流行。我们调查了2013年从韩国急性胃肠炎患者中分离出的人诺如病毒株的GI和GII基因型。对2013年1月至12月期间收集的2980份粪便标本进行了诺如病毒抗原检测。从诺如病毒抗原阳性的粪便悬液中提取RNA,通过逆转录聚合酶链反应(RT-PCR)和测序对诺如病毒衣壳(VP1)和聚合酶(RdRp)基因进行鉴定。在230株已分型的毒株中,GII.4(77.3%)是最常见的衣壳基因型,其次是GII.3(6.1%)和GII.13(3.9%)。诺如病毒GII.4变种GII.Pe/GII.4悉尼2012是最常见的聚合酶/衣壳基因型(65.7%),其次是GII.P17/GII.17(2.1%)和GII.P21/GII.3(2.1%)。对GII.Pe/GII.4悉尼2012毒株进行了系统发育、相似性和衣壳表位分析。我们得出结论,诺如病毒GII.4变种GII.Pe/GII.4悉尼2012是2013年韩国诺如病毒相关胃肠炎的主要病因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/687c/4572438/a591c55b789b/BMRI2015-468304.001.jpg

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本文引用的文献

1
Emergence of a novel GII.17 norovirus – End of the GII.4 era?
Euro Surveill. 2015 Jul 2;20(26):21178. doi: 10.2807/1560-7917.es2015.20.26.21178.
2
An increasing prevalence of recombinant GII norovirus in pediatric patients with diarrhea during 2010-2013 in China.
Infect Genet Evol. 2015 Apr;31:48-52. doi: 10.1016/j.meegid.2015.01.008. Epub 2015 Jan 16.
3
Norovirus.
Clin Microbiol Rev. 2015 Jan;28(1):134-64. doi: 10.1128/CMR.00075-14.
5
Emergence of GII.e as a major ORF 1 norovirus genotype and its associated ORF 2 GII.4 variant forms.
Infect Genet Evol. 2014 Mar;22:157-63. doi: 10.1016/j.meegid.2014.01.025. Epub 2014 Jan 28.
6
Emergence of GII.4 Sydney norovirus in South Korea during the winter of 2012-2013.
J Microbiol Biotechnol. 2013 Nov 28;23(11):1641-3. doi: 10.4014/jmb.1308.08053.
7
Proposal for a unified norovirus nomenclature and genotyping.
Arch Virol. 2013 Oct;158(10):2059-68. doi: 10.1007/s00705-013-1708-5. Epub 2013 Apr 25.
8
Recombination within the pandemic norovirus GII.4 lineage.
J Virol. 2013 Jun;87(11):6270-82. doi: 10.1128/JVI.03464-12. Epub 2013 Mar 27.
10
Emergence of a norovirus GII.4 strain correlates with changes in evolving blockade epitopes.
J Virol. 2013 Mar;87(5):2803-13. doi: 10.1128/JVI.03106-12. Epub 2012 Dec 26.

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