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鉴定秘鲁人群中非综合征型听力损失的主要遗传病因。

Identification of Main Genetic Causes Responsible for Non-Syndromic Hearing Loss in a Peruvian Population.

机构信息

Neurogenetics Research Center, Instituto Nacional de Ciencias Neurológicas, Lima 15003, Peru.

John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.

出版信息

Genes (Basel). 2019 Jul 31;10(8):581. doi: 10.3390/genes10080581.

Abstract

Hearing loss (HL) is a common sensory disorder affecting over 5% of the global population. The etiology underlying HL includes congenital and acquired causes; genetic factors are the main cause in over 50% of congenital cases. Pathogenic variants in the gene are a major cause of congenital non-syndromic hearing loss (NSHL), while their distribution is highly heterogeneous in different populations. To the best of our knowledge, there is no data regarding the genetic etiologies of HL in Peru. In this study, we screened 133 Peruvian families with NSHL living in Lima. We sequenced both exons of the gene for all probands. Seven probands with familial NSHL that remained negative for variants underwent whole genome sequencing (WGS). We identified biallelic pathogenic variants in in 43 probands; seven were heterozygous for only one allele. The c.427C>T variant was the most common pathogenic variant followed by the c.35delG variant. WGS revealed three novel variants in in two probands, one of them was predicted to affect splicing and the others produce a premature stop codon. The Peruvian population showed a complex profile for genetic variants in the gene, this particular profile might be a consequence of the admixture history in Peru.

摘要

听力损失(HL)是一种常见的感觉障碍,影响全球超过 5%的人口。HL 的病因包括先天性和获得性原因;遗传因素是超过 50%先天性病例的主要原因。基因中的致病变异是先天性非综合征性听力损失(NSHL)的主要原因,而其在不同人群中的分布高度异质。据我们所知,秘鲁没有关于 HL 遗传病因的相关数据。在这项研究中,我们对居住在利马的 133 个有 NSHL 的秘鲁家庭进行了筛查。我们对所有先证者的基因的两个外显子进行了测序。对 7 名有家族性 NSHL 的先证者进行了全基因组测序(WGS),这些先证者的基因变异检测结果仍为阴性。我们在 43 名先证者中发现了基因中的双等位基因致病性变异;其中 7 名仅携带一个等位基因的杂合子。c.427C>T 变异是最常见的致病性变异,其次是 c.35delG 变异。WGS 在 2 名先证者中发现了基因中的三个新的变异,其中一个被预测会影响剪接,其他的则产生过早的终止密码子。秘鲁人群在基因中的遗传变异呈现出复杂的模式,这种特殊的模式可能是秘鲁混合历史的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d6d/6723399/babde33dac91/genes-10-00581-g001.jpg

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