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家族性红细胞增多症中低氧诱导因子α(HIFA)基因的遗传变异性:文献和基因组数据库分析。

Genetic variability of hypoxia-inducible factor alpha (HIFA) genes in familial erythrocytosis: Analysis of the literature and genome databases.

机构信息

Medical Centre for Molecular Biology, Faculty of Medicine, Institute of Biochemistry, University of Ljubljana, Ljubljana, Slovenia.

Department of Animal Science, Biotechnical Faculty, University of Ljubljana, Domžale, Slovenia.

出版信息

Eur J Haematol. 2019 Oct;103(4):287-299. doi: 10.1111/ejh.13304. Epub 2019 Aug 23.

Abstract

Familial erythrocytosis (FE) is a congenital disorder, defined by elevated red blood cell number, hemoglobin, and hematocrit. Among eight types of FE, type 4 is caused by variants in the EPAS1 gene. Two other hypoxia-inducible factor alpha (HIFA) subunits, HIF1A and HIF3A, have not yet been associated with medical history of FE, but have potential role in the development of erythrocytosis. To improve diagnosis, it is crucial to identify new variants in genes involved in erythrocyte production. Published literature and data from genome browsers were used to obtain HIFA sequence variants associated with erythrocytosis and to locate them on protein sequence and regulatory sites. We retrieved 24 variants from the literature: 2 in HIF1A, 20 in EPAS1 and 2 in HIF3A gene. Sixteen out of 20 variants in the EPAS1 gene are positioned in a conserved region of 13 amino acids within exon 12, next to regulatory post-translational modification and binding sites, suggesting that EPAS1 has an important role in erythropoiesis. The role of HIF1A and HIF3A in the development of erythrocytosis should be further investigated.

摘要

家族性红细胞增多症(FE)是一种先天性疾病,其特征为红细胞数量、血红蛋白和血细胞比容升高。在 FE 的八种类型中,4 型由 EPAS1 基因突变引起。另外两种缺氧诱导因子 alpha(HIFA)亚基,HIF1A 和 HIF3A,尚未与 FE 的病史相关联,但在红细胞生成中具有潜在作用。为了改善诊断,识别参与红细胞生成的基因中的新变异体至关重要。我们使用已发表的文献和基因组浏览器中的数据来获得与红细胞增多症相关的 HIFA 序列变异体,并将其定位在蛋白质序列和调节位点上。我们从文献中检索到 24 个变异体:HIF1A 中的 2 个,EPAS1 中的 20 个和 HIF3A 中的 2 个。EPAS1 基因中的 20 个变异体中有 16 个位于外显子 12 中 13 个氨基酸的保守区域内,紧邻调节翻译后修饰和结合位点,这表明 EPAS1 在红细胞生成中具有重要作用。HIF1A 和 HIF3A 在红细胞增多症发展中的作用应进一步研究。

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