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从患病大理石斑鳗(Anguilla marmorata)中分离到的一种新型水生呼肠孤病毒的全基因组序列及系统进化分析。

Complete genome sequence and phylogenetic analysis of a novel aquareovirus isolated from a diseased marbled eel (Anguilla marmorata).

机构信息

Department of Life Sciences, National University of Kaohsiung, No. 700, Kaohsiung University Road, Nan-Tzu District, Kaohsiung, 81148, Taiwan.

出版信息

Arch Virol. 2019 Oct;164(10):2585-2592. doi: 10.1007/s00705-019-04365-z. Epub 2019 Aug 3.

Abstract

Marbled eel reovirus (MERV) is an aquareovirus (AQRV) isolated from diseased marbled eels (Anguilla marmorata) with petechial skin hemorrhage. In this study, we propagated MERV in a cell line derived from the brain of Aequidens rivulatus and purified viral particles by using a discontinuous cesium chloride gradient. Genomic RNA sequences were obtained through next-generation sequencing. MERV, similar to most other AQRVs, showed the presence of 11 double-stranded RNA segments encoding 12 proteins; however, the genome sequence displayed very little similarity to known AQRV sequences. Furthermore, the structural proteins of MERV were most closely related to American grass carp reovirus with sequence identity values of no more than 64.89%. Phylogenetic analysis based on the sequences of structural proteins indicated that MERV shows an evolutionary history between AQRV-B and -G, which belong to the saline and freshwater environment subgroups, respectively. We also observed that MERV showed a closer relationship to orthoreoviruses based on the protein sequences of NS38 and NS73. In summary, MERV is a novel AQRV that could be classified as a member of the new proposed AQRV species "Aquareovirus H". The taxonomic assignments and evolution of AQRVs thus warrant further investigation.

摘要

大理石鳗虹彩病毒(MERV)是从患有斑状出血病的大理石鳗(Anguilla marmorata)中分离出来的水生动物虹彩病毒(AQRV)。本研究在 Aequidens rivulatus 脑源性细胞系中增殖 MERV,并通过不连续氯化铯梯度法纯化病毒颗粒。通过下一代测序获得了基因组 RNA 序列。与大多数其他 AQRV 一样,MERV 具有 11 个双链 RNA 片段,编码 12 种蛋白;然而,基因组序列与已知的 AQRV 序列几乎没有相似性。此外,MERV 的结构蛋白与美洲草鱼虹彩病毒最为接近,序列同一性值不超过 64.89%。基于结构蛋白序列的系统发育分析表明,MERV 在 AQRV-B 和 -G 之间显示出进化历史,分别属于咸水和淡水环境亚群。我们还观察到,根据 NS38 和 NS73 的蛋白序列,MERV 与正呼肠孤病毒的关系更为密切。综上所述,MERV 是一种新型的 AQRV,可归类为新提出的 AQRV 物种“水生动物虹彩病毒 H”的成员。AQRV 的分类归属和进化因此需要进一步研究。

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