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非模式昆虫中CRISPR/Cas9基因编辑的介绍与优化

CRISPR/Cas9 Genome Editing Introduction and Optimization in the Non-model Insect .

作者信息

Kotwica-Rolinska Joanna, Chodakova Lenka, Chvalova Daniela, Kristofova Lucie, Fenclova Iva, Provaznik Jan, Bertolutti Maly, Wu Bulah Chia-Hsiang, Dolezel David

机构信息

Laboratory of Molecular Chronobiology, Department of Molecular Biology and Genetics, Institute of Entomology, Biology Centre Czech Academy of Sciences, České Budějovice, Czechia.

Department of Molecular Biology, Faculty of Sciences, University of South Bohemia, České Budějovice, Czechia.

出版信息

Front Physiol. 2019 Jul 15;10:891. doi: 10.3389/fphys.2019.00891. eCollection 2019.

Abstract

The CRISPR/Cas9 technique is widely used in experimentation with human cell lines as well as with other model systems, such as mice , zebrafish , and the fruit fly . However, publications describing the use of CRISPR/Cas9 for genome editing in non-model organisms, including non-model insects, are scarce. The introduction of this relatively new method presents many problems even for experienced researchers, especially with the lack of procedures to tackle issues concerning the efficiency of mutant generation. Here we present a protocol for efficient genome editing in the non-model insect species . We collected data from several independent trials that targeted several genes using the CRISPR/Cas9 system and determined that several crucial optimization steps led to a remarkably increased efficiency of mutant production. The main steps are as follows: the timing of embryo injection, the use of the heteroduplex mobility assay as a screening method, testing of sgRNA efficiency, and G germline mosaicism screening. The timing and the method of egg injections used here need to be optimized for other species, but other here-described optimization solutions can be applied immediately for genome editing in other insect species.

摘要

CRISPR/Cas9技术广泛应用于人类细胞系以及其他模型系统的实验中,如小鼠、斑马鱼和果蝇。然而,描述CRISPR/Cas9在非模式生物(包括非模式昆虫)中用于基因组编辑的出版物却很少。即使对于经验丰富的研究人员来说,引入这种相对较新的方法也存在许多问题,尤其是缺乏解决突变体产生效率相关问题的程序。在此,我们展示了一种在非模式昆虫物种中进行高效基因组编辑的方案。我们从几个独立试验中收集了数据,这些试验使用CRISPR/Cas9系统靶向多个基因,并确定几个关键的优化步骤显著提高了突变体产生的效率。主要步骤如下:胚胎注射的时机、使用异源双链迁移率分析作为筛选方法、测试sgRNA效率以及生殖系嵌合体筛选。这里使用的卵注射时机和方法需要针对其他物种进行优化,但这里描述的其他优化方案可立即应用于其他昆虫物种的基因组编辑。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d4e/6644776/4939abcb63d3/fphys-10-00891-g001.jpg

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