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截至 2019 年 2 月 25 日,刚果民主共和国东北部埃博拉疫情期间的疫情传播预测和疫苗接种效果评估。

Projections of epidemic transmission and estimation of vaccination impact during an ongoing Ebola virus disease outbreak in Northeastern Democratic Republic of Congo, as of Feb. 25, 2019.

机构信息

F. I. Proctor Foundation, University of California, San Francisco (UCSF), San Francisco, California, United States of America.

School of Medicine, UCSF, San Francisco, California, United States of America.

出版信息

PLoS Negl Trop Dis. 2019 Aug 5;13(8):e0007512. doi: 10.1371/journal.pntd.0007512. eCollection 2019 Aug.

Abstract

BACKGROUND

As of February 25, 2019, 875 cases of Ebola virus disease (EVD) were reported in North Kivu and Ituri Provinces, Democratic Republic of Congo. Since the beginning of October 2018, the outbreak has largely shifted into regions in which active armed conflict has occurred, and in which EVD cases and their contacts have been difficult for health workers to reach. We used available data on the current outbreak, with case-count time series from prior outbreaks, to project the short-term and long-term course of the outbreak.

METHODS

For short- and long-term projections, we modeled Ebola virus transmission using a stochastic branching process that assumes gradually quenching transmission rates estimated from past EVD outbreaks, with outbreak trajectories conditioned on agreement with the course of the current outbreak, and with multiple levels of vaccination coverage. We used two regression models to estimate similar projection periods. Short- and long-term projections were estimated using negative binomial autoregression and Theil-Sen regression, respectively. We also used Gott's rule to estimate a baseline minimum-information projection. We then constructed an ensemble of forecasts to be compared and recorded for future evaluation against final outcomes. From August 20, 2018 to February 25, 2019, short-term model projections were validated against known case counts.

RESULTS

During validation of short-term projections, from one week to four weeks, we found models consistently scored higher on shorter-term forecasts. Based on case counts as of February 25, the stochastic model projected a median case count of 933 cases by February 18 (95% prediction interval: 872-1054) and 955 cases by March 4 (95% prediction interval: 874-1105), while the auto-regression model projects median case counts of 889 (95% prediction interval: 876-933) and 898 (95% prediction interval: 877-983) cases for those dates, respectively. Projected median final counts range from 953 to 1,749. Although the outbreak is already larger than all past Ebola outbreaks other than the 2013-2016 outbreak of over 26,000 cases, our models do not project that it is likely to grow to that scale. The stochastic model estimates that vaccination coverage in this outbreak is lower than reported in its trial setting in Sierra Leone.

CONCLUSIONS

Our projections are concentrated in a range up to about 300 cases beyond those already reported. While a catastrophic outbreak is not projected, it is not ruled out, and prevention and vigilance are warranted. Prospective validation of our models in real time allowed us to generate more accurate short-term forecasts, and this process may prove useful for future real-time short-term forecasting. We estimate that transmission rates are higher than would be seen under target levels of 62% coverage due to contact tracing and vaccination, and this model estimate may offer a surrogate indicator for the outbreak response challenges.

摘要

背景

截至 2019 年 2 月 25 日,刚果民主共和国北基伍省和伊图里省共报告了 875 例埃博拉病毒病(EVD)病例。自 2018 年 10 月初以来,疫情已基本转移到发生武装冲突的地区,卫生工作者难以接触到埃博拉病毒病病例及其接触者。我们利用当前疫情的现有数据和以前疫情的病例计数时间序列,对疫情的短期和长期进程进行预测。

方法

对于短期和长期预测,我们使用随机分支过程对埃博拉病毒传播进行建模,该过程假设从过去的埃博拉病毒病疫情中估计的传播率逐渐减弱,疫情轨迹与当前疫情的进程相吻合,并考虑了多个疫苗接种覆盖率水平。我们使用两种回归模型来估计类似的预测期。短期和长期预测分别采用负二项式自回归和 Theil-Sen 回归进行估计。我们还使用 Gott 规则来估计一个基线最低信息量预测。然后,我们构建了一个预测集进行比较,并记录下来,以便将来与最终结果进行对比评估。从 2018 年 8 月 20 日至 2019 年 2 月 25 日,我们对短期模型预测进行了验证,以与已知的病例数进行比较。

结果

在对短期预测进行验证时,从一周到四周,我们发现模型在短期预测上的得分始终更高。根据截至 2 月 25 日的病例数,随机模型预测 2 月 18 日的病例数中位数为 933 例(95%预测区间:872-1054),3 月 4 日的病例数中位数为 955 例(95%预测区间:874-1105),而自回归模型预测这两天的病例数中位数分别为 889 例(95%预测区间:876-933)和 898 例(95%预测区间:877-983)。预测的最终病例数中位数范围为 953 至 1749 例。尽管疫情已经超过所有过去的埃博拉病毒病疫情,除了 2013-2016 年超过 26000 例的疫情之外,但我们的模型并不预计它可能会发展到那种规模。随机模型估计此次疫情中的疫苗接种覆盖率低于其在塞拉利昂的试验设定。

结论

我们的预测集中在已报告病例数增加约 300 例的范围内。虽然预计不会发生灾难性的疫情,但仍不能排除这种可能性,因此需要预防和保持警惕。实时前瞻性验证我们的模型使我们能够生成更准确的短期预测,并且这一过程可能对未来的实时短期预测有用。我们估计,由于接触者追踪和疫苗接种,传播率高于目标 62%覆盖率下的传播率,而这一模型估计可能是疫情应对挑战的一个替代指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8383/6695208/685205e0b16e/pntd.0007512.g001.jpg

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