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小麦(L.)休眠和非休眠基因型种子成熟过程中的转录组数据。

Transcriptomic data during seed maturation in dormant and non-dormant genotypes of wheat ( L.).

作者信息

Yamasaki Yuji, Jordan Mark C, Ayele Belay T

机构信息

Department of Plant Science, 222 Agriculture Building, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada.

Morden Research and Development Centre, Agriculture and Agri-Food Canada, Morden, Manitoba R6M 1Y5, Canada.

出版信息

Data Brief. 2019 Jul 13;25:104254. doi: 10.1016/j.dib.2019.104254. eCollection 2019 Aug.

DOI:10.1016/j.dib.2019.104254
PMID:31384647
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6661463/
Abstract

The present data profiles a large scale transcriptome changes in seed tissues (embryo and endosperm) during maturation in dormant and non-dormant genotypes of hexaploid wheat. Seed dormancy is an adaptive trait that has a significant influence on the incidence of preharvest sprouting, which is referred to as the germination of grains on the spike prior to harvest, in wheat. Given that preharvest sprouting causes a substantial yield and quality losses, elucidation of the molecular features that regulate seed dormancy has a paramount significance in the development of preharvest sprouting resistant wheat cultivars. The data presented here was produced from total RNA/mRNA samples isolated from developing seeds of dormant and non-dormant wheat genotypes using the Affymetrix GeneChip Wheat Genome Array. The raw and normalized formats of these data are available in Gene Expression Ominbus (GEO), NCBI's gene expression data repository, with accession number GSE83077.

摘要

目前的数据描绘了六倍体小麦休眠和非休眠基因型种子在成熟过程中种子组织(胚和胚乳)的大规模转录组变化。种子休眠是一种适应性性状,对小麦收获前发芽的发生率有重大影响,收获前发芽是指在收获前谷粒在穗上发芽。鉴于收获前发芽会导致大量的产量和质量损失,阐明调控种子休眠的分子特征对培育抗收获前发芽的小麦品种至关重要。这里呈现的数据来自使用Affymetrix基因芯片小麦基因组阵列从休眠和非休眠小麦基因型发育种子中分离的总RNA/mRNA样本。这些数据的原始格式和标准化格式可在NCBI的基因表达数据储存库基因表达综合数据库(GEO)中获取,登录号为GSE83077。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/4a5ce95e848e/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/44c0bd075b61/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/f498589d1b89/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/c77d49a23f01/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/4a5ce95e848e/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/44c0bd075b61/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/f498589d1b89/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/c77d49a23f01/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2d2/6661463/4a5ce95e848e/gr4.jpg

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本文引用的文献

1
Transcriptomics of cytokinin and auxin metabolism and signaling genes during seed maturation in dormant and non-dormant wheat genotypes.休眠和非休眠小麦基因型种子成熟过程中细胞分裂素和生长素代谢及信号转导基因的转录组学研究。
Sci Rep. 2019 Mar 8;9(1):3983. doi: 10.1038/s41598-019-40657-9.
2
Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.).小麦(Triticum aestivum L.)种子成熟相关转录程序及种子休眠和大小/重量基因型差异背后的调控网络。
BMC Plant Biol. 2017 Sep 16;17(1):154. doi: 10.1186/s12870-017-1104-5.
3
Transcriptional coordination and abscisic acid mediated regulation of sucrose transport and sucrose-to-starch metabolism related genes during grain filling in wheat (Triticum aestivum L.).
小麦(Triticum aestivum L.)灌浆期蔗糖转运及蔗糖-淀粉代谢相关基因的转录调控与脱落酸介导的调节
Plant Sci. 2015 Nov;240:143-60. doi: 10.1016/j.plantsci.2015.09.010. Epub 2015 Sep 10.
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Mapping quantitative trait loci controlling agronomic traits in the spring wheat cross RL4452x'AC Domain'.定位春小麦杂交种RL4452דAC Domain”中控制农艺性状的数量性状基因座。
Genome. 2005 Oct;48(5):870-83. doi: 10.1139/g05-055.