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在不同温度下发育的吸胀小麦(L.)种子的转录组数据。

Transcriptomic data of imbibed wheat ( L.) seeds developed at different temperatures.

作者信息

Tuan Pham Anh, Jordan Mark C, Ayele Belay T

机构信息

Department of Plant Science, 222 Agriculture Building, University of Manitoba, Winnipeg, Manitoba, R3T 2N2 Canada.

Morden Research and Development Centre, Agriculture and Agri-Food Canada, Morden, Manitoba, R6M 1Y5, Canada.

出版信息

Data Brief. 2023 Sep 3;50:109541. doi: 10.1016/j.dib.2023.109541. eCollection 2023 Oct.

DOI:10.1016/j.dib.2023.109541
PMID:37732293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10507141/
Abstract

The present data profile a large scale transcriptome changes associated with variations in seed dormancy level induced by seed development temperature in hexaploid wheat. Seed dormancy is an important trait that inhibits seed germination under optimal conditions and therefore has important implication in preventing the incidence of preharvest sprouting, which refers to the germination of seeds on the mother plant prior to harvest, in wheat. Since preharvest sprouting, which causes a significant reduction in seed yield and quality in wheat, is closely associated with low level of seed dormancy manifested in modern wheat cultivars, it is important to develop wheat cultivars with optimal level of dormancy to enhance wheat yield and quality. Thus, elucidation of the molecular mechanisms that regulate seed dormancy is critical for the development of preharvest sprouting resistant wheat cultivars. The data we are presenting here were generated from total RNA samples extracted from imbibed seeds of a dormant wheat ( L.) genotype that were developed at different temperatures using the Affymetrix GeneChip Wheat Genome Array. The raw and normalized formats of these data are deposited in the NCBI's gene expression data repository, Gene Expression Ominbus (GEO) with accession number GSE153527.

摘要

目前的数据描绘了与六倍体小麦种子发育温度诱导的种子休眠水平变化相关的大规模转录组变化。种子休眠是一种重要特性,它在最佳条件下抑制种子萌发,因此对于防止小麦收获前发芽(即种子在收获前在母株上萌发)的发生具有重要意义。由于收获前发芽会导致小麦种子产量和质量显著下降,且与现代小麦品种中表现出的低水平种子休眠密切相关,因此培育具有最佳休眠水平的小麦品种对于提高小麦产量和质量很重要。因此,阐明调节种子休眠的分子机制对于培育抗收获前发芽的小麦品种至关重要。我们在此展示的数据来自使用Affymetrix GeneChip小麦基因组阵列从在不同温度下发育的休眠小麦(L.)基因型的吸胀种子中提取的总RNA样本。这些数据的原始格式和标准化格式已存入NCBI的基因表达数据储存库Gene Expression Ominbus(GEO),登录号为GSE153527。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/91d8da445160/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/72b52ae73209/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/907adfb893a9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/c813198a6a7c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/91d8da445160/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/72b52ae73209/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/907adfb893a9/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/c813198a6a7c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f230/10507141/91d8da445160/gr4.jpg

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本文引用的文献

1
A shift in abscisic acid/gibberellin balance underlies retention of dormancy induced by seed development temperature.种子发育温度诱导休眠的维持与脱落酸/赤霉素平衡的转变有关。
Plant Cell Environ. 2021 Jul;44(7):2230-2244. doi: 10.1111/pce.13963. Epub 2020 Dec 9.
2
Transcriptional coordination and abscisic acid mediated regulation of sucrose transport and sucrose-to-starch metabolism related genes during grain filling in wheat (Triticum aestivum L.).小麦(Triticum aestivum L.)灌浆期蔗糖转运及蔗糖-淀粉代谢相关基因的转录调控与脱落酸介导的调节
Plant Sci. 2015 Nov;240:143-60. doi: 10.1016/j.plantsci.2015.09.010. Epub 2015 Sep 10.
3
Integrated analysis of seed proteome and mRNA oxidation reveals distinct post-transcriptional features regulating dormancy in wheat (Triticum aestivum L.).
种子蛋白组和 mRNA 氧化的综合分析揭示了调控小麦(Triticum aestivum L.)休眠的不同转录后特征。
Plant Biotechnol J. 2013 Oct;11(8):921-32. doi: 10.1111/pbi.12083. Epub 2013 Jun 7.