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sp. nov.,从羊驼()中分离得到。

sp. nov., isolated from alpaca ().

机构信息

Department of Bacteriology, Animal and Plant Health Agency (Weybridge), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.

Animal and Plant Health Agency (Bury St. Edmunds), Rougham Hill, Bury St Edmunds, Suffolk IP33 2RX, UK.

出版信息

Int J Syst Evol Microbiol. 2019 Oct;69(10):3170-3177. doi: 10.1099/ijsem.0.003607. Epub 2019 Aug 8.

Abstract

Ten strains of an -like organism were isolated from alpaca () in the UK over a period of 5 years, with no known epidemiological linkages. The isolates are distinct, based on both phenotype and genotype, from any previously described species. Molecular analysis, based on 16S rRNA, and gene sequences, placed the isolates as a novel, early branching, lineage within the currently recognised . In agreement with the results of the single-gene analysis, average nucleotide identity values, based on whole genome sequences, showed very similar identities to a number of members of the notably , and . At least two phenotypic characteristics differentiate the alpaca isolates from other species, and from taxa likely falling within this group but awaiting formal species description, with and subsp. being the most closely related phenotypically. The alpaca isolates can be differentiated from by production of β-galactosidase (ONPG) and acid from raffinose, and from subsp. by production of acid from d-sorbitol and failure to produce acid from d-xylose. Isolates were obtained from multiple sites in alpaca including respiratory tract, alimentary tract and internal organs although further evidence is required to understand any pathogenic significance. Based on the results of characterization described here, it is proposed that the isolates constitute a novel species, sp. nov. The type strain is W1618 (LMG30745 NCTC14090) isolated in the UK in 2012 from oesophageal ulceration in an alpaca ().

摘要

在过去的 5 年中,从英国的羊驼中分离出了 10 株类似的 - 样生物体,它们之间没有已知的流行病学联系。这些分离株在表型和基因型上均与任何先前描述的 物种明显不同。基于 16S rRNA 和 基因序列的分子分析将这些分离株归类为目前公认的 内一个新的、早期分支的谱系。与单基因分析的结果一致,基于全基因组序列的平均核苷酸同一性值与该组内的许多成员非常相似,尤其是 、 和 。至少有两种表型特征将羊驼分离株与其他 物种区分开来,也与可能属于该组但等待正式物种描述的分类单元区分开来,其中 和 subsp. 在表型上最为密切相关。羊驼分离株可通过产生β-半乳糖苷酶(ONPG)和从棉子糖中产生酸来与 区分,也可通过从 d-山梨醇中产生酸和不产生酸来从 subsp. 区分。分离株从羊驼的多个部位获得,包括呼吸道、消化道和内脏器官,但需要进一步的证据来了解任何致病性意义。基于这里描述的特征描述,建议这些分离株构成一个新的物种,即 sp. nov.。该模式株是 W1618(LMG30745 NCTC14090),于 2012 年从英国一只患有食道溃疡的羊驼中分离得到。

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