来自南非西北省环境地表水的潜在致病性产气荚膜梭菌菌株的基因组序列草图
Draft Genome Sequences of Potentially Pathogenic Clostridium perfringens Strains from Environmental Surface Water in the North West Province of South Africa.
作者信息
Fourie Johannes Cornelius Jacobus, Sanko Tomasz J, Bezuidenhout Cornelius Carlos, Mienie Charlotte, Adeleke Rasheed Adegbola
机构信息
Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.
Agricultural Research Council, Institute for Soil, Climate and Water, Pretoria, South Africa.
出版信息
Microbiol Resour Announc. 2019 Aug 8;8(32):e00407-19. doi: 10.1128/MRA.00407-19.
Abstract
Surface water systems in South Africa are experiencing a major decline in quality due to various anthropogenic factors. This poses a possible health risk for humans. Here, we present the draft genome sequences of three isolates obtained from a fecally polluted river system in the North West province of South Africa.
摘要
由于各种人为因素，南非的地表水系统质量正在大幅下降。这对人类构成了潜在的健康风险。在此，我们展示了从南非西北省一条受粪便污染的河流系统中分离出的三株菌株的基因组序列草图。
相似文献
1
Draft Genome Sequences of Potentially Pathogenic Clostridium perfringens Strains from Environmental Surface Water in the North West Province of South Africa.来自南非西北省环境地表水的潜在致病性产气荚膜梭菌菌株的基因组序列草图
Microbiol Resour Announc. 2019 Aug 8;8(32):e00407-19. doi: 10.1128/MRA.00407-19.
2
Draft genome assemblies of 12 strains isolated from the North West province of South Africa.从南非西北省分离出的12株菌株的基因组草图组装。
Microbiol Resour Announc. 2023 Nov 16;12(11):e0075723. doi: 10.1128/MRA.00757-23. Epub 2023 Oct 31.
3
Bacterial community composition of an urban river in the North West Province, South Africa, in relation to physico-chemical water quality.南非西北省一条城市河流的细菌群落组成与理化水质的关系。
Environ Sci Pollut Res Int. 2016 Mar;23(6):5868-80. doi: 10.1007/s11356-015-5786-7. Epub 2015 Nov 23.
4
Microbiological quality of groundwater sources used by rural communities in Limpopo Province, South Africa.南非林波波省农村社区使用的地下水源的微生物质量
Water Sci Technol. 2006;54(11-12):371-7. doi: 10.2166/wst.2006.890.
5
Assessment of Potentially Toxic Elements as Non-Point Sources of Contamination in the Upper Crocodile Catchment Area, North-West Province, South Africa.评估南非西北省上克鲁格流域地区潜在有毒元素作为非点源污染的情况。
Int J Environ Res Public Health. 2018 Mar 23;15(4):576. doi: 10.3390/ijerph15040576.
6
Genomic analyses of Clostridium perfringens isolates from five toxinotypes.来自五种毒素型的产气荚膜梭菌分离株的基因组分析。
Res Microbiol. 2015 May;166(4):255-63. doi: 10.1016/j.resmic.2014.10.003. Epub 2014 Oct 16.
7
Cercospora zeina from Maize in South Africa Exhibits High Genetic Diversity and Lack of Regional Population Differentiation.来自南非玉米上的玉蜀黍尾孢表现出高度的遗传多样性且缺乏区域种群分化。
Phytopathology. 2016 Oct;106(10):1194-1205. doi: 10.1094/PHYTO-02-16-0084-FI. Epub 2016 Aug 11.
8
Virulence profiles of vancomycin-resistant enterococci isolated from surface and ground water utilized by humans in the North West Province, South Africa: a public health perspective.南非西北省人类使用的地表水和地下水分离的万古霉素耐药肠球菌的毒力特征：公共卫生视角。
Environ Sci Pollut Res Int. 2019 May;26(15):15105-15114. doi: 10.1007/s11356-019-04836-5. Epub 2019 Mar 28.
9
Molecular and morphological characterisation of four diplostomid metacercariae infecting Tilapia sparrmanii (Perciformes: Cichlidae) in the North West Province, South Africa.感染南非西北省斯氏罗非鱼（鲈形目：丽鱼科）的四种复口吸虫囊蚴的分子和形态学特征
Parasitol Res. 2019 May;118(5):1403-1416. doi: 10.1007/s00436-019-06285-y. Epub 2019 Mar 25.
10
The reach of human health risks associated with metals/metalloids in water and vegetables along a contaminated river catchment: South Africa and Mozambique.受污染河流流域水中和蔬菜中金属/类金属相关的人类健康风险的影响范围：南非和莫桑比克。
Chemosphere. 2018 May;199:1-9. doi: 10.1016/j.chemosphere.2018.01.160. Epub 2018 Feb 1.
引用本文的文献
1
Antibiotic Resistance Genes and Bacterial Communities of Farmed Rainbow Trout Fillets ().养殖虹鳟鱼片的抗生素抗性基因与细菌群落（）
Front Microbiol. 2020 Dec 3;11:590902. doi: 10.3389/fmicb.2020.590902. eCollection 2020.
本文引用的文献
1
Expansion of the Clostridium perfringens toxin-based typing scheme.基于产气荚膜梭菌毒素的分型方案的扩展。
Anaerobe. 2018 Oct;53:5-10. doi: 10.1016/j.anaerobe.2018.04.011. Epub 2018 Apr 20.
2
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data.DeepARG：一种从宏基因组数据中预测抗生素耐药基因的深度学习方法。
Microbiome. 2018 Feb 1;6(1):23. doi: 10.1186/s40168-018-0401-z.
3
Inactivation Strategies for Clostridium perfringens Spores and Vegetative Cells.产气荚膜梭菌芽孢和营养细胞的灭活策略
Appl Environ Microbiol. 2016 Dec 15;83(1). doi: 10.1128/AEM.02731-16. Print 2017 Jan 1.
4
Antibiotic resistance, efflux pump genes and virulence determinants in Enterococcus spp. from surface water systems.地表水系统中肠球菌属的抗生素耐药性、外排泵基因及毒力决定因素
Environ Sci Pollut Res Int. 2016 Nov;23(21):21501-21510. doi: 10.1007/s11356-016-7369-7. Epub 2016 Aug 11.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI：一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
7
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on.VFDB 2016：用于大数据分析的分层细化数据集——十年回顾
Nucleic Acids Res. 2016 Jan 4;44(D1):D694-7. doi: 10.1093/nar/gkv1239. Epub 2015 Nov 17.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
Genetic diversity among toxigenic clostridia isolated from soil, water, meat and associated polluted sites in South India.
Indian J Med Microbiol. 2009 Oct-Dec;27(4):311-20. doi: 10.4103/0255-0857.55443.
Zotero 插件