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PubMed MeSH 术语间层次网络的时间演化。

Time evolution of the hierarchical networks between PubMed MeSH terms.

机构信息

Dept. of Biological Physics, Eötvös University, Budapest, Hungary.

MTA-ELTE Statistical and Biological Physics Research Group, Budapest, Hungary.

出版信息

PLoS One. 2019 Aug 12;14(8):e0220648. doi: 10.1371/journal.pone.0220648. eCollection 2019.

DOI:10.1371/journal.pone.0220648
PMID:31404084
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6690519/
Abstract

Hierarchical organisation is a prevalent feature of many complex networks appearing in nature and society. A relating interesting, yet less studied question is how does a hierarchical network evolve over time? Here we take a data driven approach and examine the time evolution of the network between the Medical Subject Headings (MeSH) provided by the National Center for Biotechnology Information (NCBI, part of the U. S. National Library of Medicine). The network between the MeSH terms is organised into 16 different, yearly updated hierarchies such as "Anatomy", "Diseases", "Chemicals and Drugs", etc. The natural representation of these hierarchies is given by directed acyclic graphs, composed of links pointing from nodes higher in the hierarchy towards nodes in lower levels. Due to the yearly updates, the structure of these networks is subject to constant evolution: new MeSH terms can appear, terms becoming obsolete can be deleted or be merged with other terms, and also already existing parts of the network may be rewired. We examine various statistical properties of the time evolution, with a special focus on the attachment and detachment mechanisms of the links, and find a few general features that are characteristic for all MeSH hierarchies. According to the results, the hierarchies investigated display an interesting interplay between non-uniform preference with respect to multiple different topological and hierarchical properties.

摘要

层次结构是许多出现在自然界和社会中的复杂网络的普遍特征。一个相关的、有趣但研究较少的问题是,层次网络如何随时间演变?在这里,我们采用数据驱动的方法,研究了由美国国家医学图书馆国家生物技术信息中心(NCBI)提供的医学主题词(MeSH)之间的网络随时间的演化。MeSH 术语之间的网络组织成 16 个不同的、每年更新的层次结构,如“解剖学”、“疾病”、“化学物质和药物”等。这些层次结构的自然表示形式是有向无环图,由从层次结构中较高的节点指向较低层次的节点的链接组成。由于每年的更新,这些网络的结构会不断演变:新的 MeSH 术语可能会出现,过时的术语可能会被删除或与其他术语合并,而且网络的已有部分也可能会重新连接。我们研究了时间演化的各种统计特性,特别关注链接的附加和分离机制,并发现了一些对所有 MeSH 层次结构都具有特征的一般特征。根据结果,所研究的层次结构显示了在多个不同拓扑和层次结构属性方面的非均匀偏好之间的有趣相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/a87a316d5db6/pone.0220648.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/eba13c278472/pone.0220648.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/189141fa54cd/pone.0220648.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/a87a316d5db6/pone.0220648.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/eba13c278472/pone.0220648.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/189141fa54cd/pone.0220648.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5d6/6690519/a87a316d5db6/pone.0220648.g003.jpg

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