脱卤球菌属菌株FL2的全基因组序列，该菌株是从原始淡水沉积物中分离出的一种以三氯乙烯为呼吸底物的厌氧菌。
Complete Genome Sequence of Dehalococcoides mccartyi Strain FL2, a Trichloroethene-Respiring Anaerobe Isolated from Pristine Freshwater Sediment.
作者信息
Yan Jun, Yang Yi, Li Xiuying, Löffler Frank E
机构信息
Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China.
Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.
出版信息
Microbiol Resour Announc. 2019 Aug 15;8(33):e00558-19. doi: 10.1128/MRA.00558-19.
Abstract
strain FL2 couples growth to hydrogen oxidation and reductive dechlorination of trichloroethene and - and -1,2-dichloroethenes. Strain FL2 has a 1.42-Mb genome with a G+C content of 47.0% and carries 1,465 protein-coding sequences, including 24 reductive dehalogenase genes.
摘要
菌株FL2将生长与氢气氧化以及三氯乙烯和1,2 - 二氯乙烯的还原脱氯作用联系起来。菌株FL2拥有一个1.42兆碱基的基因组，G+C含量为47.0%，并携带1465个蛋白质编码序列，其中包括24个还原脱卤酶基因。
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2
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3
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Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
4
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Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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