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本文引用的文献

1
Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae.地杆菌属中有机卤呼吸的基因组决定因素,地杆菌属是地杆菌科的一个不寻常成员。
BMC Genomics. 2012 May 22;13:200. doi: 10.1186/1471-2164-13-200.
2
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.地杆菌属 mccartyi 属,新种,严格依赖有机卤化物进行呼吸的厌氧细菌,与卤代物循环和生物修复有关,属于新的细菌类群,脱卤球菌纲(Dehalococcoidia classis nov.),脱卤球菌目(Dehalococcoidales ord. nov.)和脱卤球菌科(Dehalococcoidaceae fam. nov.),在绿弯菌门(Chloroflexi)内。
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3
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses.可与脱硫弧菌希氏亚种和产甲烷杆菌共培养的脱氯氯代环己烷 195 的可持续共营养生长:全球转录组学和蛋白质组学分析。
ISME J. 2012 Feb;6(2):410-21. doi: 10.1038/ismej.2011.111. Epub 2011 Sep 1.
4
Identification and transcriptional analysis of trans-DCE-producing reductive dehalogenases in Dehalococcoides species.鉴定和转录分析 Dehalococcoides 物种中产生反式-DCE 的还原脱卤酶。
ISME J. 2010 Aug;4(8):1020-30. doi: 10.1038/ismej.2010.27. Epub 2010 Apr 1.
5
The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system of Rhodobacter sphaeroides. cobinamide 酰胺水解酶(形成 cobyrinic 酸)cbiZ 酶:球形红杆菌 cobamide 重塑系统的关键活性。
Mol Microbiol. 2009 Dec;74(5):1198-210. doi: 10.1111/j.1365-2958.2009.06928.x. Epub 2009 Nov 2.
6
Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195.嗜盐脱卤球菌195株中类咕啉响应基因的转录组微阵列分析
FEMS Microbiol Lett. 2009 May;294(2):198-206. doi: 10.1111/j.1574-6968.2009.01569.x. Epub 2009 Apr 1.
7
Identification of a chlorobenzene reductive dehalogenase in Dehalococcoides sp. strain CBDB1.在脱卤球菌属菌株CBDB1中鉴定出一种氯苯还原脱卤酶。
Appl Environ Microbiol. 2007 Dec;73(23):7717-24. doi: 10.1128/AEM.01649-07. Epub 2007 Oct 12.
8
Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium.维生素B12和共培养物对限定培养基中脱卤球菌分离株生长的影响。
Appl Environ Microbiol. 2007 May;73(9):2847-53. doi: 10.1128/AEM.02574-06. Epub 2007 Mar 2.
9
Geobacter lovleyi sp. nov. strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium.嗜洛弗地杆菌新种菌株SZ,一种新型的金属还原和四氯乙烯脱氯细菌。
Appl Environ Microbiol. 2006 Apr;72(4):2775-82. doi: 10.1128/AEM.72.4.2775-2782.2006.
10
Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains.靶向16S rRNA和还原脱卤酶基因的定量PCR可同时监测多种脱卤球菌菌株。
Appl Environ Microbiol. 2006 Apr;72(4):2765-74. doi: 10.1128/AEM.72.4.2765-2774.2006.

意想不到的种间钴胺素转移特异性:从 Geobacter spp. 到有机卤代物呼吸的 Dehalococcoides mccartyi 菌株。

Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organohalide-respiring Dehalococcoides mccartyi strains.

机构信息

Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.

出版信息

Appl Environ Microbiol. 2012 Sep;78(18):6630-6. doi: 10.1128/AEM.01535-12. Epub 2012 Jul 6.

DOI:10.1128/AEM.01535-12
PMID:22773645
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3426716/
Abstract

Dehalococcoides mccartyi strains conserve energy from reductive dechlorination reactions catalyzed by corrinoid-dependent reductive dehalogenase enzyme systems. Dehalococcoides lacks the ability for de novo corrinoid synthesis, and pure cultures require the addition of cyanocobalamin (vitamin B(12)) for growth. In contrast, Geobacter lovleyi, which dechlorinates tetrachloroethene to cis-1,2-dichloroethene (cis-DCE), and the nondechlorinating species Geobacter sulfurreducens have complete sets of cobamide biosynthesis genes and produced 12.9 ± 2.4 and 24.2 ± 5.8 ng of extracellular cobamide per liter of culture suspension, respectively, during growth with acetate and fumarate in a completely synthetic medium. G. lovleyi-D. mccartyi strain BAV1 or strain FL2 cocultures provided evidence for interspecies corrinoid transfer, and cis-DCE was dechlorinated to vinyl chloride and ethene concomitant with Dehalococcoides growth. In contrast, negligible increase in Dehalococcoides 16S rRNA gene copies and insignificant dechlorination occurred in G. sulfurreducens-D. mccartyi strain BAV1 or strain FL2 cocultures. Apparently, G. lovleyi produces a cobamide that complements Dehalococcoides' nutritional requirements, whereas G. sulfurreducens does not. Interestingly, Dehalococcoides dechlorination activity and growth could be restored in G. sulfurreducens-Dehalococcoides cocultures by adding 10 μM 5',6'-dimethylbenzimidazole. Observations made with the G. sulfurreducens-Dehalococcoides cocultures suggest that the exchange of the lower ligand generated a cobalamin, which supported Dehalococcoides activity. These findings have implications for in situ bioremediation and suggest that the corrinoid metabolism of Dehalococcoides must be understood to faithfully predict, and possibly enhance, reductive dechlorination activities.

摘要

地杆菌属能够从钴胺素依赖型还原脱卤酶酶系统催化的还原脱卤反应中保存能量。地杆菌属缺乏从头合成钴胺素的能力,纯培养需要添加氰钴胺素(维生素 B12)才能生长。相比之下,能够将四氯乙烯还原为顺式-1,2-二氯乙烯(顺式-DCE)的脱硫地杆菌以及非脱卤物种脱硫地杆菌具有完整的 cobamide 生物合成基因,并且在完全合成培养基中使用乙酸盐和延胡索酸盐生长时,分别产生了 12.9 ± 2.4 和 24.2 ± 5.8 ng/L 细胞外 cobamide。G. lovleyi-D. mccartyi 菌株 BAV1 或菌株 FL2 共培养提供了种间钴胺素转移的证据,同时伴随着地杆菌属的生长,顺式-DCE 被还原为氯乙烯和乙烯。相比之下,在 G. sulfurreducens-D. mccartyi 菌株 BAV1 或菌株 FL2 共培养中,地杆菌属 16S rRNA 基因拷贝数几乎没有增加,脱卤作用也微不足道。显然,G. lovleyi 产生了一种 cobamide,可以补充地杆菌属的营养需求,而 G. sulfurreducens 则不能。有趣的是,通过添加 10 μM 5',6'-二甲基苯并咪唑,可以在 G. sulfurreducens-地杆菌属共培养中恢复地杆菌属的脱氯活性和生长。在 G. sulfurreducens-地杆菌属共培养中观察到的现象表明,配体的交换产生了一种 cobamide,它支持了地杆菌属的活性。这些发现对原位生物修复具有重要意义,并表明必须了解地杆菌属的钴胺素代谢,以准确预测并可能增强还原脱卤活性。