• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

下一代测序预测脂磷壁酸刺激的人嗜中性粒细胞中 miRNA 与靶基因之间的相互作用网络。

Next-generation sequencing predicts interaction network between miRNA and target genes in lipoteichoic acid-stimulated human neutrophils.

机构信息

Department of Emergency Medicine, Kaohsiung Medical University Hospital, Kaohsiung 807, Taiwan, R.O.C.

Graduate Institute of Clinical Medicine, Kaohsiung Medical University, Kaohsiung 807, Taiwan, R.O.C.

出版信息

Int J Mol Med. 2019 Oct;44(4):1436-1446. doi: 10.3892/ijmm.2019.4295. Epub 2019 Jul 31.

DOI:10.3892/ijmm.2019.4295
PMID:31432136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6713436/
Abstract

Toll‑like receptors (TLRs), which are a class of pattern‑recognition receptors, can sense specific molecules of pathogens and then activate immune cells, such as neutrophils. The regulation of TLR signaling in immune cells has been investigated by various studies. However, the interaction of TLR signaling‑activated microRNAs (miRNAs) and genes has not been well investigated in a specific type of immune cells. In the present study, neutrophils were isolated from peripheral blood of a healthy donor, and then treated for 16 h with Staphylococcus aureus lipoteichoic acid (LTA), which is an agonist of TLR2. The miRNA and mRNA expression profiles were analyzed via next‑generation sequencing and bioinformatics approaches. A total of 290 differentially expressed genes between LTA‑treated and vehicle‑treated neutrophils were identified. Gene ontology analysis revealed that various biological processes and pathways, including inflammatory responses, defense response, positive regulation of cell migration, motility, and locomotion, and cell surface receptor signaling pathway, were significantly enriched. In addition, 38 differentially expressed miRNAs were identified and predicted to be involved in regulating signal transduction and cell communication. The interaction of 4 miRNAs (hsa‑miR‑34a‑5p, hsa‑miR‑34c‑5p, hsa‑miR‑708‑5p, and hsa‑miR‑1271‑5p) and 5 genes (MET, CACNB3, TNS3, TTYH3, and HBEGF) was proposed to participate in the LTA‑induced signaling network. The present findings may provide novel information for understanding the detailed expression profiles and potential networks between miRNAs and their target genes in LTA‑stimulated healthy neutrophils.

摘要

toll 样受体(TLRs)是一类模式识别受体,能够识别病原体的特定分子,然后激活免疫细胞,如中性粒细胞。已经有许多研究探讨了 TLR 信号在免疫细胞中的调控。然而,在特定类型的免疫细胞中,TLR 信号激活的 microRNAs(miRNAs)和基因之间的相互作用尚未得到充分研究。本研究中,从健康供者的外周血中分离中性粒细胞,然后用金黄色葡萄球菌脂磷壁酸(LTA)处理 16 小时,LTA 是 TLR2 的激动剂。通过下一代测序和生物信息学方法分析 miRNA 和 mRNA 表达谱。共鉴定出 LTA 处理和载体处理的中性粒细胞之间 290 个差异表达基因。基因本体分析显示,各种生物学过程和途径,包括炎症反应、防御反应、细胞迁移、运动和运动的正调节,以及细胞表面受体信号通路,显著富集。此外,还鉴定出 38 个差异表达的 miRNA,并预测它们参与调节信号转导和细胞通讯。提出了 4 个 miRNA(hsa-miR-34a-5p、hsa-miR-34c-5p、hsa-miR-708-5p 和 hsa-miR-1271-5p)和 5 个基因(MET、CACNB3、TNS3、TTYH3 和 HBEGF)之间的相互作用,参与 LTA 诱导的信号网络。本研究结果可能为理解 LTA 刺激健康中性粒细胞中 miRNA 及其靶基因之间的详细表达谱和潜在网络提供新的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/00f6a2494aa1/IJMM-44-04-1436-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/c3d24028146c/IJMM-44-04-1436-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/e0904fb08c10/IJMM-44-04-1436-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/1346fb2354f6/IJMM-44-04-1436-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/06b03e4010ac/IJMM-44-04-1436-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/f4dc41814df2/IJMM-44-04-1436-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/00f6a2494aa1/IJMM-44-04-1436-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/c3d24028146c/IJMM-44-04-1436-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/e0904fb08c10/IJMM-44-04-1436-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/1346fb2354f6/IJMM-44-04-1436-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/06b03e4010ac/IJMM-44-04-1436-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/f4dc41814df2/IJMM-44-04-1436-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8f7/6713436/00f6a2494aa1/IJMM-44-04-1436-g05.jpg

相似文献

1
Next-generation sequencing predicts interaction network between miRNA and target genes in lipoteichoic acid-stimulated human neutrophils.下一代测序预测脂磷壁酸刺激的人嗜中性粒细胞中 miRNA 与靶基因之间的相互作用网络。
Int J Mol Med. 2019 Oct;44(4):1436-1446. doi: 10.3892/ijmm.2019.4295. Epub 2019 Jul 31.
2
Identification of TLR2 and TLR4‑induced microRNAs in human mesenchymal stem cells and their possible roles in regulating TLR signals.人骨髓间充质干细胞中TLR2和TLR4诱导的微小RNA的鉴定及其在调节TLR信号中的可能作用。
Mol Med Rep. 2016 Jun;13(6):4969-80. doi: 10.3892/mmr.2016.5197. Epub 2016 Apr 27.
3
Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle.整合分析 microRNAs 和 mRNAs 揭示了内罗尔牛组成和代谢的调控。
BMC Genomics. 2018 Feb 7;19(1):126. doi: 10.1186/s12864-018-4514-3.
4
MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice.微小RNA表达与基因调控驱动PyMT小鼠乳腺癌的进展和转移。
Breast Cancer Res. 2016 Jul 22;18(1):75. doi: 10.1186/s13058-016-0735-z.
5
MicroRNA transcriptome profiling of mice brains infected with Japanese encephalitis virus by RNA sequencing.通过RNA测序对感染日本脑炎病毒的小鼠大脑进行微小RNA转录组分析。
Infect Genet Evol. 2016 Apr;39:249-257. doi: 10.1016/j.meegid.2016.01.028. Epub 2016 Feb 2.
6
Identification of microRNA-mRNA interactions in atrial fibrillation using microarray expression profiles and bioinformatics analysis.利用微阵列表达谱和生物信息学分析鉴定心房颤动中的微小RNA-信使核糖核酸相互作用
Mol Med Rep. 2016 Jun;13(6):4535-40. doi: 10.3892/mmr.2016.5106. Epub 2016 Apr 12.
7
Lipoteichoic acid (LTA) from Staphylococcus aureus stimulates human neutrophil cytokine release by a CD14-dependent, Toll-like-receptor-independent mechanism: Autocrine role of tumor necrosis factor-[alpha] in mediating LTA-induced interleukin-8 generation.金黄色葡萄球菌的脂磷壁酸(LTA)通过一种依赖CD14、不依赖Toll样受体的机制刺激人中性粒细胞释放细胞因子:肿瘤坏死因子-α在介导LTA诱导白细胞介素-8生成中的自分泌作用。
Crit Care Med. 2006 Mar;34(3):835-41. doi: 10.1097/01.ccm.0000202204.01230.44.
8
Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq.基于RNA测序的小细胞骨肉瘤miRNA-mRNA调控网络的鉴定
Oncotarget. 2017 Jun 27;8(26):42525-42536. doi: 10.18632/oncotarget.17208.
9
Identification and interaction analysis of key genes and microRNAs in hepatocellular carcinoma by bioinformatics analysis.基于生物信息学分析的肝细胞癌关键基因和微小RNA的鉴定与相互作用分析
World J Surg Oncol. 2017 Mar 16;15(1):63. doi: 10.1186/s12957-017-1127-2.
10
Co-Expression Network Analysis Identifies miRNA⁻mRNA Networks Potentially Regulating Milk Traits and Blood Metabolites.共表达网络分析鉴定出可能调控乳性状和血液代谢物的 miRNA-mRNA 网络。
Int J Mol Sci. 2018 Aug 24;19(9):2500. doi: 10.3390/ijms19092500.

引用本文的文献

1
Transcriptomic analysis of lipoteichoic acid‑treated undifferentiated and neutrophil‑like differentiated HL‑60 cells.脂磷壁酸处理的未分化及中性粒细胞样分化HL-60细胞的转录组分析
Exp Ther Med. 2024 Feb 22;27(4):158. doi: 10.3892/etm.2024.12446. eCollection 2024 Apr.
2
Prediction of miRNA‑mRNA network regulating the migration ability of cytarabine‑resistant HL60 cells.调控阿糖胞苷耐药HL60细胞迁移能力的miRNA-mRNA网络预测
Biomed Rep. 2023 Dec 13;20(2):20. doi: 10.3892/br.2023.1708. eCollection 2024 Feb.
3
Integrative analysis of the immune-related ceRNA network in fetal growth restriction based on weighted gene co-expression network analysis.

本文引用的文献

1
Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data.通过整合 miRNA 结合和靶基因表达数据进行功能性 miRNA 靶基因预测。
Genome Biol. 2019 Jan 22;20(1):18. doi: 10.1186/s13059-019-1629-z.
2
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.Cytoscape StringApp:蛋白质组学数据的网络分析和可视化。
J Proteome Res. 2019 Feb 1;18(2):623-632. doi: 10.1021/acs.jproteome.8b00702. Epub 2018 Dec 5.
3
Nuclear functions of mammalian MicroRNAs in gene regulation, immunity and cancer.
基于加权基因共表达网络分析的胎儿生长受限免疫相关 ceRNA 网络的综合分析。
Arch Gynecol Obstet. 2023 Oct;308(4):1217-1228. doi: 10.1007/s00404-022-06805-9. Epub 2022 Oct 11.
4
The Gene Family: From Embryo to Disease.基因家族:从胚胎到疾病
Front Mol Neurosci. 2021 Jun 28;14:672511. doi: 10.3389/fnmol.2021.672511. eCollection 2021.
5
LncRNA BCAR4 promotes liver cancer progression by upregulating ANAPC11 expression through sponging miR‑1261.长链非编码 RNA BCAR4 通过海绵吸附 miR-1261 上调 ANAPC11 表达促进肝癌进展。
Int J Mol Med. 2020 Jul;46(1):159-166. doi: 10.3892/ijmm.2020.4586. Epub 2020 Apr 22.
哺乳动物 MicroRNAs 在基因调控、免疫和癌症中的核功能。
Mol Cancer. 2018 Feb 22;17(1):64. doi: 10.1186/s12943-018-0765-5.
4
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.miRTarBase 更新 2018:一个经过实验验证的 microRNA-靶标相互作用的资源库。
Nucleic Acids Res. 2018 Jan 4;46(D1):D296-D302. doi: 10.1093/nar/gkx1067.
5
The Clinical Application of MicroRNAs in Infectious Disease.微小RNA在传染病中的临床应用
Front Immunol. 2017 Sep 25;8:1182. doi: 10.3389/fimmu.2017.01182. eCollection 2017.
6
Mononuclear-macrophages but not neutrophils act as major infiltrating anti-leptospiral phagocytes during leptospirosis.在钩端螺旋体病期间,单核巨噬细胞而非中性粒细胞是主要浸润的抗钩端螺旋体吞噬细胞。
PLoS One. 2017 Jul 11;12(7):e0181014. doi: 10.1371/journal.pone.0181014. eCollection 2017.
7
MiR-344b-1-3p targets TLR2 and negatively regulates TLR2 signaling pathway.微小RNA-344b-1-3p靶向Toll样受体2并负向调节Toll样受体2信号通路。
Int J Chron Obstruct Pulmon Dis. 2017 Feb 14;12:627-638. doi: 10.2147/COPD.S120415. eCollection 2017.
8
Purified Streptococcus pneumoniae Endopeptidase O (PepO) Enhances Particle Uptake by Macrophages in a Toll-Like Receptor 2- and miR-155-Dependent Manner.纯化的肺炎链球菌内肽酶O(PepO)以Toll样受体2和miR-155依赖性方式增强巨噬细胞对颗粒的摄取。
Infect Immun. 2017 Mar 23;85(4). doi: 10.1128/IAI.01012-16. Print 2017 Apr.
9
A Subset of Neutrophils Expressing Markers of Antigen-Presenting Cells in Human Visceral Leishmaniasis.在人类内脏利什曼病中表达抗原呈递细胞标志物的中性粒细胞亚群。
J Infect Dis. 2016 Nov 15;214(10):1531-1538. doi: 10.1093/infdis/jiw394. Epub 2016 Sep 6.
10
miEAA: microRNA enrichment analysis and annotation.miEAA:微小RNA富集分析与注释
Nucleic Acids Res. 2016 Jul 8;44(W1):W110-6. doi: 10.1093/nar/gkw345. Epub 2016 Apr 29.