• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

非小细胞肺癌患者血液样本中差异甲基化信号的全表观基因组关联分析

Epigenome-Wide Association Analysis of Differentially Methylated Signals in Blood Samples of Patients with Non-Small-Cell Lung Cancer.

作者信息

Hong Yoonki, Choi Hye-Mi, Cheong Hyun Sub, Shin Hyoung Doo, Choi Chang Min, Kim Woo Jin

机构信息

Department of Internal Medicine, School of Medicine, Kangwon National University, Chuncheon 200-701, Korea.

Division of Biomedical Convergence, College of Biomedical Science, and Institute of Bioscience & Biotechnology, Kangwon National University, Chuncheon 200-701, Korea.

出版信息

J Clin Med. 2019 Aug 25;8(9):1307. doi: 10.3390/jcm8091307.

DOI:10.3390/jcm8091307
PMID:31450665
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6780065/
Abstract

Lung cancer is a common form of cancer and the leading cause of cancer-related deaths worldwide. Early diagnosis using noninvasive biomarkers may play an important role in increasing the survival rate of patients with lung cancer. Biomarkers of DNA methylation in blood samples may improve the early diagnosis of lung cancer. Here, we used peripheral blood samples obtained from 150 patients diagnosed with non-small-cell lung cancer (NSCLC) and 150 healthy controls. The latter were selected by frequency matching with the 150 patients with NSCLC, based on age, sex, and smoking status. Genome-wide methylation profiles were obtained using a MethylationEPIC BeadChip Kit, which covers the 850k bp cytosine-phosphate-guanine site. This analysis showed two significant differentially methylated changes (cg12169243 [] and cg25429010 []) associated with NSCLC in current smokers, six changes (cg09245319, cg17183999 [], cg06366994 [], cg24992236 [], cg22144719, and cg22448179 [epidermal growth factor receptor]) associated with epidermal growth factor receptor mutation in patients with adenocarcinoma, and four changes (cg25021476 [], cg04989085 [], cg20905681 [], and cg26379694) associated with advanced-stage NSCLC compared with stage I NSCLC. The validation of these DNA methylation changes and further research on the related genes may help develop easily accessible biomarkers for the early diagnosis or prognosis of NSCLC.

摘要

肺癌是一种常见的癌症形式,也是全球癌症相关死亡的主要原因。使用非侵入性生物标志物进行早期诊断可能在提高肺癌患者的生存率方面发挥重要作用。血液样本中DNA甲基化的生物标志物可能会改善肺癌的早期诊断。在此,我们使用了从150例被诊断为非小细胞肺癌(NSCLC)的患者和150名健康对照者中获取的外周血样本。后者是根据年龄、性别和吸烟状况与150例NSCLC患者进行频率匹配后挑选出来的。使用甲基化EPIC BeadChip试剂盒获得全基因组甲基化谱,该试剂盒覆盖850k bp的胞嘧啶-磷酸-鸟嘌呤位点。该分析显示,当前吸烟者中与NSCLC相关的有两个显著的差异甲基化变化(cg12169243 []和cg25429010 []),腺癌患者中与表皮生长因子受体突变相关的有六个变化(cg09245319、cg17183999 []、cg06366994 []、cg24992236 []、cg22144719和cg22448179 [表皮生长因子受体]),与I期NSCLC相比,晚期NSCLC相关的有四个变化(cg25021476 []、cg04989085 []、cg20905681 []和cg26379694)。对这些DNA甲基化变化的验证以及对相关基因的进一步研究可能有助于开发易于获取的生物标志物,用于NSCLC的早期诊断或预后评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f70/6780065/df1a0f3e49cc/jcm-08-01307-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f70/6780065/aaf141a74301/jcm-08-01307-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f70/6780065/df1a0f3e49cc/jcm-08-01307-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f70/6780065/aaf141a74301/jcm-08-01307-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f70/6780065/df1a0f3e49cc/jcm-08-01307-g002.jpg

相似文献

1
Epigenome-Wide Association Analysis of Differentially Methylated Signals in Blood Samples of Patients with Non-Small-Cell Lung Cancer.非小细胞肺癌患者血液样本中差异甲基化信号的全表观基因组关联分析
J Clin Med. 2019 Aug 25;8(9):1307. doi: 10.3390/jcm8091307.
2
Identification of Serial DNA Methylation Changes in the Blood Samples of Patients with Lung Cancer.肺癌患者血液样本中连续DNA甲基化变化的鉴定
Tuberc Respir Dis (Seoul). 2019 Apr;82(2):126-132. doi: 10.4046/trd.2018.0042. Epub 2018 Sep 28.
3
Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance.对非小细胞肺癌异种移植物的表观基因组分析揭示了 LRP12 DNA 甲基化作为卡铂耐药的预测性生物标志物。
Genome Med. 2018 Jul 20;10(1):55. doi: 10.1186/s13073-018-0562-1.
4
Identification and validation of the methylation biomarkers of non-small cell lung cancer (NSCLC).非小细胞肺癌(NSCLC)甲基化生物标志物的鉴定与验证
Clin Epigenetics. 2015 Jan 22;7(1):3. doi: 10.1186/s13148-014-0035-3. eCollection 2015.
5
A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples.一种新方法,通过对汇集样本中的循环无细胞游离 DNA 进行全基因组范围内的表观遗传组学发现,以开发用于结直肠癌筛查的非侵入性甲基化生物标志物。
Clin Epigenetics. 2018 Apr 16;10:53. doi: 10.1186/s13148-018-0487-y. eCollection 2018.
6
Epithelial-specific methylation marker: a potential plasma biomarker in advanced non-small cell lung cancer.上皮特异性甲基化标志物:晚期非小细胞肺癌潜在的血浆生物标志物。
J Thorac Oncol. 2011 Nov;6(11):1818-25. doi: 10.1097/JTO.0b013e318226b46f.
7
Genome-wide analysis of DNA methylation in bronchial washings.支气管灌洗液中 DNA 甲基化的全基因组分析。
Clin Epigenetics. 2018 May 18;10:65. doi: 10.1186/s13148-018-0498-8. eCollection 2018.
8
Integrative DNA methylome analysis of pan-cancer biomarkers in cancer discordant monozygotic twin-pairs.癌症不一致性同卵双胞胎对中泛癌生物标志物的综合DNA甲基化组分析。
Clin Epigenetics. 2016 Jan 20;8:7. doi: 10.1186/s13148-016-0172-y. eCollection 2016.
9
A Panel of Novel Detection and Prognostic Methylated DNA Markers in Primary Non-Small Cell Lung Cancer and Serum DNA.原发性非小细胞肺癌及血清 DNA 中一组新型检测和预后甲基化 DNA 标志物的研究
Clin Cancer Res. 2017 Nov 15;23(22):7141-7152. doi: 10.1158/1078-0432.CCR-17-1222. Epub 2017 Aug 29.
10
Frequent epigenetic inactivation of deleted in lung and esophageal cancer 1 gene by promoter methylation in non-small-cell lung cancer.非小细胞肺癌中因启动子甲基化导致肺及食管发育不全相关基因 1 频繁的表观遗传失活。
Clin Lung Cancer. 2010 Jul 1;11(4):264-70. doi: 10.3816/CLC.2010.n.034.

引用本文的文献

1
In Silico Analysis Uncovers FOXA1 as a Potential Biomarker for Predicting Neoadjuvant Chemotherapy Response in Fine-Needle Aspiration Biopsies.计算机模拟分析揭示FOXA1作为细针穿刺活检中预测新辅助化疗反应的潜在生物标志物。
J Cancer. 2024 Sep 30;15(18):6052-6072. doi: 10.7150/jca.101901. eCollection 2024.
2
Transcriptome Analysis of Beta-Catenin-Related Genes in CD34+ Haematopoietic Stem and Progenitor Cells from Patients with AML.急性髓系白血病患者CD34+造血干细胞和祖细胞中β-连环蛋白相关基因的转录组分析
Mediterr J Hematol Infect Dis. 2024 Jul 1;16(1):e2024058. doi: 10.4084/MJHID.2024.058. eCollection 2024.
3

本文引用的文献

1
Estimating the global cancer incidence and mortality in 2018: GLOBOCAN sources and methods.估算 2018 年全球癌症发病率和死亡率:GLOBOCAN 来源和方法。
Int J Cancer. 2019 Apr 15;144(8):1941-1953. doi: 10.1002/ijc.31937. Epub 2018 Dec 6.
2
Association of internal smoking dose with blood DNA methylation in three racial/ethnic populations.三种不同种族/民族人群中内吸烟量与血液 DNA 甲基化的关联。
Clin Epigenetics. 2018 Aug 23;10(1):110. doi: 10.1186/s13148-018-0543-7.
3
Clinical Characteristics and Prognostic Factors of Lung Cancer in Korea: A Pilot Study of Data from the Korean Nationwide Lung Cancer Registry.
Development and validation of cuproptosis-related lncRNAs associated with pancreatic cancer immune microenvironment based on single-cell.
基于单细胞技术的胰腺癌免疫微环境相关铜死亡相关 lncRNAs 的开发和验证。
Front Immunol. 2023 Sep 25;14:1220760. doi: 10.3389/fimmu.2023.1220760. eCollection 2023.
4
Precision Oncology: Artificial Intelligence and DNA Methylation Analysis of Circulating Cell-Free DNA for Lung Cancer Detection.精准肿瘤学:用于肺癌检测的循环游离DNA的人工智能与DNA甲基化分析
Front Oncol. 2022 May 4;12:790645. doi: 10.3389/fonc.2022.790645. eCollection 2022.
5
Peripheral blood transcriptome heterogeneity and prognostic potential in lung cancer revealed by RNA-Seq.RNA-Seq 揭示肺癌外周血转录组异质性及其预后潜能。
J Cell Mol Med. 2021 Sep;25(17):8271-8284. doi: 10.1111/jcmm.16773. Epub 2021 Jul 21.
6
Association of mammographic density with blood DNA methylation.乳腺密度与血液 DNA 甲基化的关联。
Epigenetics. 2022 May;17(5):531-546. doi: 10.1080/15592294.2021.1928994. Epub 2021 Jun 11.
7
Identification of seven tumor-educated platelets RNAs for cancer diagnosis.鉴定七种肿瘤教育血小板 RNA 用于癌症诊断。
J Clin Lab Anal. 2021 Jun;35(6):e23791. doi: 10.1002/jcla.23791. Epub 2021 May 6.
8
A genome-wide methylation study reveals X chromosome and childhood trauma methylation alterations associated with borderline personality disorder.一项全基因组甲基化研究揭示了与边缘型人格障碍相关的 X 染色体和儿童期创伤性甲基化改变。
Transl Psychiatry. 2021 Jan 5;11(1):5. doi: 10.1038/s41398-020-01139-z.
9
Identification of a novel prognostic DNA methylation signature for lung adenocarcinoma based on consensus clustering method.基于共识聚类方法鉴定肺腺癌的新型预后 DNA 甲基化标志物。
Cancer Med. 2020 Oct;9(20):7488-7502. doi: 10.1002/cam4.3343. Epub 2020 Aug 28.
10
The prognostic value of a Methylome-based Malignancy Density Scoring System to predict recurrence risk in early-stage Lung Adenocarcinoma.基于甲基化组的恶性密度评分系统对预测早期肺腺癌复发风险的预后价值。
Theranostics. 2020 Jun 18;10(17):7635-7644. doi: 10.7150/thno.44229. eCollection 2020.
韩国肺癌的临床特征与预后因素:来自韩国全国肺癌登记处数据的初步研究
Tuberc Respir Dis (Seoul). 2019 Apr;82(2):118-125. doi: 10.4046/trd.2017.0128. Epub 2018 Jun 19.
4
Cytoskeleton-Associated Protein 4 Is a Novel Serodiagnostic Marker for Lung Cancer.细胞骨架相关蛋白 4 是一种新型的肺癌血清学诊断标志物。
Am J Pathol. 2018 Jun;188(6):1328-1333. doi: 10.1016/j.ajpath.2018.03.007. Epub 2018 May 8.
5
Five-Year Follow-Up of Nivolumab in Previously Treated Advanced Non-Small-Cell Lung Cancer: Results From the CA209-003 Study.纳武利尤单抗治疗经治晚期非小细胞肺癌的 5 年随访结果:CA209-003 研究结果。
J Clin Oncol. 2018 Jun 10;36(17):1675-1684. doi: 10.1200/JCO.2017.77.0412. Epub 2018 Mar 23.
6
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.对Illumina MethylationEPIC BeadChip微阵列用于全基因组DNA甲基化分析的批判性评估。
Genome Biol. 2016 Oct 7;17(1):208. doi: 10.1186/s13059-016-1066-1.
7
DNA methylation changes measured in pre-diagnostic peripheral blood samples are associated with smoking and lung cancer risk.在诊断前外周血样本中检测到的DNA甲基化变化与吸烟和肺癌风险相关。
Int J Cancer. 2017 Jan 1;140(1):50-61. doi: 10.1002/ijc.30431. Epub 2016 Oct 11.
8
Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip.Illumina Infinium MethylationEPIC BeadChip上多态性和脱靶探针结合位点的鉴定。
Genom Data. 2016 May 26;9:22-4. doi: 10.1016/j.gdata.2016.05.012. eCollection 2016 Sep.
9
Epigenetics in non-small cell lung cancer: from basics to therapeutics.非小细胞肺癌的表观遗传学:从基础到治疗。
Transl Lung Cancer Res. 2016 Apr;5(2):155-71. doi: 10.21037/tlcr.2016.02.02.
10
No association between global DNA methylation in peripheral blood and lung cancer risk in nonsmoking women: results from a multicenter study in Eastern and Central Europe.外周血中全基因组DNA甲基化与非吸烟女性肺癌风险之间无关联:来自东欧和中欧多中心研究的结果
Eur J Cancer Prev. 2018 Jan;27(1):1-5. doi: 10.1097/CEJ.0000000000000244.