Suppr超能文献

多肽在水-脂界面的螺旋-卷曲转变

Coil-helix transition of polypeptide at water-lipid interface.

作者信息

Sharma Ganga P, Reshetnyak Yana K, Andreev Oleg A, Karbach Michael, Müller Gerhard

机构信息

Department of Physics, University of Rhode Island, Kingston RI 02881, USA.

Fachgruppe Physik, Bergische Universität Wuppertal, D-42097 Wuppertal, Germany.

出版信息

J Stat Mech. 2015 Jan;2015. doi: 10.1088/1742-5468/2015/01/P01034. Epub 2015 Jan 27.

Abstract

We present the exact solution of a microscopic statistical mechanical model for the transformation of a long polypeptide between an unstructured coil conformation and an -helix conformation. The polypeptide is assumed to be adsorbed to the interface between a polar and a non-polar environment such as realized by water and the lipid bilayer of a membrane. The interfacial coil-helix transformation is the first stage in the folding process of helical membrane proteins. Depending on the values of model parameters, the conformation changes as a crossover, a discontinuous transition, or a continuous transition with helicity in the role of order parameter. Our model is constructed as a system of statistically interacting quasiparticles that are activated from the helix pseudo-vacuum. The particles represent links between adjacent residues in coil conformation that form a self-avoiding random walk in two dimensions. Explicit results are presented for helicity, entropy, heat capacity, and the average numbers and sizes of sboth coil and helix segments.

摘要

我们给出了一个微观统计力学模型的精确解,该模型用于描述长多肽在无结构卷曲构象和α-螺旋构象之间的转变。假设多肽吸附在极性和非极性环境之间的界面上,例如由水和膜的脂质双层所构成的环境。界面上的卷曲-螺旋转变是螺旋膜蛋白折叠过程的第一阶段。根据模型参数的值,构象变化呈现为交叉转变、不连续转变或连续转变,其中螺旋度作为序参量。我们的模型构建为一个由从螺旋伪真空中激活的统计相互作用准粒子组成的系统。这些粒子代表卷曲构象中相邻残基之间的连接,它们在二维空间中形成自回避随机游走。给出了关于螺旋度、熵、热容量以及卷曲和螺旋片段的平均数量和大小的明确结果。

相似文献

1
Coil-helix transition of polypeptide at water-lipid interface.
J Stat Mech. 2015 Jan;2015. doi: 10.1088/1742-5468/2015/01/P01034. Epub 2015 Jan 27.
2
Helix-Coil Transition at a Glycine Following a Nascent α-Helix: A Synergetic Guidance Mechanism for Helix Growth.
J Phys Chem A. 2020 Sep 17;124(37):7478-7490. doi: 10.1021/acs.jpca.0c05489. Epub 2020 Sep 2.
4
Helix-coil transition theories. Are they correct?
Acta Biochim Pol. 1997;44(3):423-32.
5
Thermodynamics of melittin binding to lipid bilayers. Aggregation and pore formation.
Biochemistry. 2009 Mar 31;48(12):2586-96. doi: 10.1021/bi802127h.

引用本文的文献

1
Aiming the magic bullet: targeted delivery of imaging and therapeutic agents to solid tumors by pHLIP peptides.
Front Pharmacol. 2024 Mar 13;15:1355893. doi: 10.3389/fphar.2024.1355893. eCollection 2024.
2
Kinetics of pHLIP peptide insertion into and exit from a membrane.
Proc Natl Acad Sci U S A. 2020 Jun 2;117(22):12095-12100. doi: 10.1073/pnas.1917857117. Epub 2020 May 14.
3
Peptides of pHLIP family for targeted intracellular and extracellular delivery of cargo molecules to tumors.
Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):E2811-E2818. doi: 10.1073/pnas.1715350115. Epub 2018 Mar 5.
4
pHLIP Peptide Interaction with a Membrane Monitored by SAXS.
J Phys Chem B. 2016 Nov 10;120(44):11484-11491. doi: 10.1021/acs.jpcb.6b06643. Epub 2016 Oct 27.

本文引用的文献

1
Statistically interacting vacancy particles.
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012137. doi: 10.1103/PhysRevE.89.012137. Epub 2014 Jan 23.
2
Family of pH (low) insertion peptides for tumor targeting.
Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5834-9. doi: 10.1073/pnas.1303708110. Epub 2013 Mar 25.
3
Modulation of the pHLIP transmembrane helix insertion pathway.
Biophys J. 2012 Apr 18;102(8):1846-55. doi: 10.1016/j.bpj.2012.03.021.
4
Generalized Pauli principle for particles with distinguishable traits.
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jan;85(1 Pt 1):011144. doi: 10.1103/PhysRevE.85.011144. Epub 2012 Jan 27.
5
Taxonomy of particles in Ising spin chains.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 1):021136. doi: 10.1103/PhysRevE.84.021136. Epub 2011 Aug 25.
6
Theory for RNA folding, stretching, and melting including loops and salt.
Biophys J. 2011 Jun 8;100(11):2745-53. doi: 10.1016/j.bpj.2011.04.038.
7
Dynamics of a polymer chain confined in a membrane.
Eur Phys J E Soft Matter. 2011 May;34(5):46. doi: 10.1140/epje/i2011-11046-3. Epub 2011 May 11.
8
Fluctuations of a long, semiflexible polymer in a narrow channel.
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Oct;82(4 Pt 1):041801. doi: 10.1103/PhysRevE.82.041801. Epub 2010 Oct 1.
9
pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path.
Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4081-6. doi: 10.1073/pnas.0914330107. Epub 2010 Feb 16.
10
Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane.
Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15340-5. doi: 10.1073/pnas.0804746105. Epub 2008 Sep 30.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验