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SRSF3 调控的 RNA 可变剪接通过影响多种细胞过程促进神经胶质瘤的肿瘤发生。

SRSF3-Regulated RNA Alternative Splicing Promotes Glioblastoma Tumorigenicity by Affecting Multiple Cellular Processes.

机构信息

The Ken & Ruth Davee Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, Illinois.

Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois.

出版信息

Cancer Res. 2019 Oct 15;79(20):5288-5301. doi: 10.1158/0008-5472.CAN-19-1504. Epub 2019 Aug 28.

Abstract

Misregulated alternative RNA splicing (AS) contributes to the tumorigenesis and progression of human cancers, including glioblastoma (GBM). Here, we showed that a major splicing factor, serine and arginine rich splicing factor 3 (SRSF3), was frequently upregulated in clinical glioma specimens and that elevated SRSF3 was associated with tumor progression and a poor prognosis for patients with glioma. In patient-derived glioma stem-like cells (GSC), SRSF3 expression promoted cell proliferation, self-renewal, and tumorigenesis. Transcriptomic profiling identified more than 1,000 SRSF3-affected AS events, with a preference for exon skipping in genes involved with cell mitosis. Motif analysis identified the sequence of CA(G/C/A)CC(C/A) as a potential exonic splicing enhancer for these SRSF3-regulated exons. To evaluate the biological impact of SRSF3-affected AS events, four candidates were selected whose AS correlated with expression in glioma tissues, and their splicing pattern was modified using a CRISPR/Cas9 approach. Two functionally validated AS candidates were further investigated for the mechanisms underlying their isoform-specific functions. Specifically, following knockout of SRSF3, transcription factor ETS variant 1 () gene showed exon skipping at exon 7, while nudE neurodevelopment protein 1 () gene showed replacement of terminal exon 9 with a mutually exclusive exon 9'. SRSF3-regulated AS of these two genes markedly increased their oncogenic activity in GSCs. Taken together, our data demonstrate that SRSF3 is a key regulator of AS in GBM and that understanding mechanisms of misregulated AS could provide critical insights for developing effective therapeutic strategies against GBMs. SIGNIFICANCE: SRSF3 is a significant regulator of glioma-associated alternative splicing, implicating SRSF3 as an oncogenic factor that contributes to the tumor biology of GBM.

摘要

失调的选择性 RNA 剪接(AS)导致包括胶质母细胞瘤(GBM)在内的人类癌症的发生和发展。在这里,我们表明主要剪接因子丝氨酸/精氨酸丰富剪接因子 3(SRSF3)在临床脑肿瘤标本中经常上调,并且 SRSF3 升高与肿瘤进展和胶质母细胞瘤患者的预后不良相关。在患者来源的神经胶质瘤干细胞样细胞(GSC)中,SRSF3 表达促进细胞增殖、自我更新和致瘤性。转录组谱分析确定了超过 1000 个 SRSF3 影响的 AS 事件,这些事件偏爱与细胞有丝分裂相关的基因中的外显子跳跃。基序分析确定了 CA(G/C/A)CC(A/C/A)序列作为这些 SRSF3 调节的外显子的潜在外显子剪接增强子。为了评估 SRSF3 影响的 AS 事件的生物学影响,选择了四个候选者,其 AS 与脑肿瘤组织中的表达相关,并且使用 CRISPR/Cas9 方法修改了它们的剪接模式。进一步研究了两个功能验证的 AS 候选者,以了解其异构体特异性功能的机制。具体而言,在敲除 SRSF3 后,转录因子 ETS 变体 1()基因在外显子 7 处出现外显子跳跃,而 nudE 神经发育蛋白 1()基因显示用互斥外显子 9'替换末端外显子 9。这两个基因的 SRSF3 调节的 AS 显著增加了它们在 GSCs 中的致癌活性。总之,我们的数据表明 SRSF3 是 GBM 中 AS 的关键调节剂,并且了解失调的 AS 机制可以为开发针对 GBM 的有效治疗策略提供重要见解。

意义

SRSF3 是胶质母细胞瘤相关选择性剪接的重要调节剂,表明 SRSF3 是一种致癌因子,有助于 GBM 的肿瘤生物学。

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