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二氧(杂)茂型单加氧酶(pMMO)第二配位层中氨基酸残基对氧分子活化作用的影响。

Role of Amino Acid Residues for Dioxygen Activation in the Second Coordination Sphere of the Dicopper Site of pMMO.

机构信息

Institute for Materials Chemistry and Engineering and IRCCS , Kyushu University , Fukuoka 819-0395 , Japan.

出版信息

Inorg Chem. 2019 Sep 16;58(18):12280-12288. doi: 10.1021/acs.inorgchem.9b01752. Epub 2019 Aug 29.

Abstract

Formation of an active oxygen species at the dicopper site of pMMO is studied by using density functional theory (DFT) calculations. The role of the amino acid residues of tyrosine (Tyr374) and glutamate (Glu35) located in the second coordination sphere of the dicopper site is discussed in detail. The phenolic proton of the tyrosine residue is transferred to the CuO core in a two-step manner via the glutamate residue, and an electron is directly transferred to the CuO core. These proton- and electron-transfer processes induce the O-O bond cleavage of the μ-η:η-peroxodicopper(II) species to form the (μ-oxo)(μ-hydroxo)CuCu species, which is able to play a key role of methane hydroxylation at the dicopper site of pMMO ( 2013 , 52 , 7907 ). This proton-coupled electron-transfer mechanism is a little different from that in tyrosinase in that the proton of substrate tyrosine is directly transferred to the dicopper site ( 2006 , 128 , 9873 ) because there is no proton acceptor in the vicinity of the dicopper site of tyrosinase. The rate-determining step for the formation of the (μ-oxo)(μ-hydroxo)CuCu species is determined to be the O-O bond cleavage. These results shed new light on the interpretation of the role of the tyrosine and glutamate residues located in the second coordination sphere of the dicopper site of pMMO.

摘要

通过使用密度泛函理论(DFT)计算,研究了 pMMO 双核位形成活性氧物种的过程。详细讨论了位于双核位第二配位层的酪氨酸(Tyr374)和谷氨酸(Glu35)氨基酸残基的作用。酪氨酸残基的酚质子通过谷氨酸残基以两步方式转移到 CuO 核,电子直接转移到 CuO 核。这些质子和电子转移过程诱导μ-η:η-过氧双核(II)物种的 O-O 键断裂,形成(μ-氧代)(μ-羟代)CuCu 物种,该物种能够在 pMMO 的双核位发挥甲烷羟化的关键作用( 2013 ,52 ,7907 )。这种质子耦合电子转移机制与酪氨酸酶中的机制略有不同,因为酪氨酸酶的双核位附近没有质子受体,所以底物酪氨酸的质子直接转移到双核位( 2006 ,128 ,9873 )。形成(μ-氧代)(μ-羟代)CuCu 物种的速率决定步骤被确定为 O-O 键断裂。这些结果为解释 pMMO 双核位第二配位层中酪氨酸和谷氨酸残基的作用提供了新的认识。

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