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mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species.mlplasmids：一个用于预测单物种质粒和染色体衍生序列的用户友好型工具。
Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000224. Epub 2018 Nov 1.
2
IncHI2 Plasmids Are Predominant in Antibiotic-Resistant Isolates.IncHI2质粒在耐药菌株中占主导地位。
Front Microbiol. 2016 Sep 30;7:1566. doi: 10.3389/fmicb.2016.01566. eCollection 2016.
3
Complete Genome and Plasmid Sequences of Three Canadian Isolates of Salmonella enterica subsp. enterica Serovar Heidelberg from Human and Food Sources.来自人类和食物源的三株加拿大肠炎沙门氏菌肠炎亚种海德堡血清型菌株的全基因组和质粒序列
Genome Announc. 2016 Jan 14;4(1):e01526-15. doi: 10.1128/genomeA.01526-15.
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OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI：一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
5
Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens.来自肉鸡的肠炎沙门氏菌非伤寒血清型鼠伤寒沙门氏菌、肠炎沙门氏菌、海德堡沙门氏菌、哈达尔沙门氏菌和肯塔基沙门氏菌分离株的基因组比较
PLoS One. 2015 Jun 17;10(6):e0128773. doi: 10.1371/journal.pone.0128773. eCollection 2015.
6
Prevalence and Antimicrobial Resistance of Salmonella and Escherichia coli from Australian Cattle Populations at Slaughter.澳大利亚屠宰牛群中沙门氏菌和大肠杆菌的流行情况及耐药性
J Food Prot. 2015 May;78(5):912-20. doi: 10.4315/0362-028X.JFP-14-476.
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RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
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In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.使用质粒查找工具（PlasmidFinder）和质粒多位点序列分型进行质粒的电子检测和分型
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Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
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从澳大利亚红肉动物物种中分离出的四种抗生素抗性菌株的基因组序列草图

Draft Genome Sequences of Four Antibiotic-Resistant Strains Isolated from Australian Red Meat Animal Species.

作者信息

Sarjit Amreeta, Ravensdale Joshua T, Coorey Ranil, Fegan Narelle, Dykes Gary A

机构信息

School of Public Health, Curtin University, Bentley, Western Australia, Australia.

CSIRO Agriculture and Food, Brisbane, Queensland, Australia.

出版信息

Microbiol Resour Announc. 2019 Aug 29;8(35):e00925-19. doi: 10.1128/MRA.00925-19.

DOI:10.1128/MRA.00925-19
PMID:31467110
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6715880/
Abstract

The genome sequences of four antibiotic-resistant strains isolated from red meat animals in Australia are presented. Multidrug-resistant serovar Heidelberg 329 and serovar Typhimurium 2470 harbored an IncHI2 plasmid similar to the multidrug-resistant Heidelberg strain N13-01290 plasmid pN13-01290_23 previously isolated in Canada.

摘要

本文展示了从澳大利亚红肉动物中分离出的四种抗生素抗性菌株的基因组序列。多重耐药血清型海德堡329和鼠伤寒血清型2470携带一种IncHI2质粒，该质粒与先前在加拿大分离出的多重耐药海德堡菌株N13 - 01290的质粒pN13 - 01290_23相似。