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一种新合成的 6-甲基-7,8,9-[1,2,4]三唑并[4,3-][1,2,4]三嗪-8-酮,作为潜在的腺苷 A1 受体抑制剂:实验与计算研究的结合。

A newly synthesized 6-methyl-7,8,9-[1,2,4]triazolo[4,3-][1,2,4]triazepin-8-one for potential inhibitor of adenosine A1 receptor: a combined experimental and computational studies.

机构信息

Laboratoire de Chimie Organique Heterocyclique, URAC 21, Pôle de Compétences Pharmacochimie, Faculte des Sciences, Universite Mohammed V, Rabat, Morocco.

Organic Chemistry Department, Science Faculty, RUDN University, Moscow, Russian Federation.

出版信息

J Biomol Struct Dyn. 2020 Aug;38(12):3578-3586. doi: 10.1080/07391102.2019.1662848. Epub 2019 Sep 13.

DOI:10.1080/07391102.2019.1662848
PMID:31476977
Abstract

6-Methyl-7,8,9-[1,2,4]triazolo[4,3-][1,2,4]triazepin-8-onehas been synthesized, characterized by spectroscopic techniques (FT-IR, H and C NMR) and finally the structure was confirmed by single crystal X-ray diffraction studies. In the title molecule, CHNO, the 7-membered ring adopts a bowl-like conformation. In the crystal, the molecules form stacks along the -axis direction through offset π-stacking interactions between the 5-membered rings and C-H···N hydrogen bonds. The stacks are associated a combination of N-H···N, C-H···O and C-H···N hydrogen bonds. Further, the Hirshfeld surface analysis reveals the nature of molecular interactions and the fingerprint plot provides information about the percentage contribution from each individual molecular contact to the surface. In addition, due to its biological interest the target molecule adenosine A1 receptor was found based on Structural Activity Relationship (SAR) analysis and, further, subjected into molecular docking and molecular dynamics analysis to understand the binding interaction and stability of the molecule in adenosine A1 receptor system. Furthermore, the Density Functional Theory (DFT) calculations were carried for free compound and the compound in active site (single point DFT), to know the internal stability.Communicated by Ramaswamy H. Sarma.

摘要

6-甲基-7,8,9-[1,2,4]三唑并[4,3-][1,2,4]三嗪-8-酮已被合成,并通过光谱技术(FT-IR、H 和 C NMR)进行了表征,最后通过单晶 X 射线衍射研究确定了其结构。在标题分子 CHNO 中,7 元环采用碗状构象。在晶体中,分子通过 5 元环之间的偏移 π-堆积相互作用和 C-H···N 氢键沿 - 轴方向形成堆积。这些堆积通过 N-H···N、C-H···O 和 C-H···N 氢键的组合进行关联。此外,Hirshfeld 表面分析揭示了分子相互作用的性质,指纹图提供了关于每个单个分子接触对表面的贡献百分比的信息。此外,由于其生物兴趣,基于构效关系(SAR)分析发现了目标分子腺苷 A1 受体,并进一步进行了分子对接和分子动力学分析,以了解分子在腺苷 A1 受体系统中的结合相互作用和稳定性。此外,还对游离化合物和活性部位(单点 DFT)中的化合物进行了密度泛函理论(DFT)计算,以了解内部稳定性。通讯作者:Ramaswamy H. Sarma。

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